Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18035

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18030 and CA264_18035 are separated by 109 nucleotidesCA264_18035 and CA264_18040 are separated by 65 nucleotides CA264_18030: CA264_18030 - cation transporter, at 4,192,439 to 4,193,710 _18030 CA264_18035: CA264_18035 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 4,193,820 to 4,194,410 _18035 CA264_18040: CA264_18040 - kynurenine 3-monooxygenase, at 4,194,476 to 4,195,843 _18040 Position (kb) 4193 4194 4195Strain fitness (log2 ratio) -2 -1 0 1 2at 4192.828 kb on - strand, within CA264_18030at 4193.040 kb on - strand, within CA264_18030at 4193.093 kb on + strand, within CA264_18030at 4193.267 kb on + strand, within CA264_18030at 4193.268 kb on - strand, within CA264_18030at 4193.302 kb on - strand, within CA264_18030at 4193.394 kb on + strand, within CA264_18030at 4193.395 kb on - strand, within CA264_18030at 4193.522 kb on + strand, within CA264_18030at 4193.542 kb on + strand, within CA264_18030at 4193.584 kb on - strandat 4193.613 kb on + strandat 4193.613 kb on + strandat 4193.808 kb on + strandat 4193.809 kb on - strandat 4193.834 kb on - strandat 4193.907 kb on + strand, within CA264_18035at 4193.908 kb on - strand, within CA264_18035at 4193.933 kb on - strand, within CA264_18035at 4193.953 kb on + strand, within CA264_18035at 4193.954 kb on - strand, within CA264_18035at 4194.021 kb on + strand, within CA264_18035at 4194.021 kb on + strand, within CA264_18035at 4194.022 kb on - strand, within CA264_18035at 4194.108 kb on + strand, within CA264_18035at 4194.109 kb on - strand, within CA264_18035at 4194.200 kb on + strand, within CA264_18035at 4194.302 kb on - strand, within CA264_18035at 4194.350 kb on + strand, within CA264_18035at 4194.351 kb on - strand, within CA264_18035at 4194.445 kb on + strandat 4194.476 kb on - strandat 4194.540 kb on - strandat 4194.675 kb on + strand, within CA264_18040at 4194.675 kb on + strand, within CA264_18040at 4194.710 kb on + strand, within CA264_18040at 4194.711 kb on - strand, within CA264_18040at 4194.750 kb on - strand, within CA264_18040at 4194.781 kb on - strand, within CA264_18040at 4194.782 kb on + strand, within CA264_18040at 4194.782 kb on + strand, within CA264_18040at 4194.782 kb on + strand, within CA264_18040at 4194.783 kb on - strand, within CA264_18040at 4194.783 kb on - strand, within CA264_18040at 4194.848 kb on - strand, within CA264_18040at 4194.915 kb on + strand, within CA264_18040at 4194.916 kb on - strand, within CA264_18040at 4194.916 kb on - strand, within CA264_18040at 4195.019 kb on + strand, within CA264_18040at 4195.019 kb on + strand, within CA264_18040at 4195.168 kb on + strand, within CA264_18040at 4195.174 kb on + strand, within CA264_18040at 4195.302 kb on - strand, within CA264_18040

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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4,192,828 - CA264_18030 0.31 -0.5
4,193,040 - CA264_18030 0.47 -0.3
4,193,093 + CA264_18030 0.51 -0.0
4,193,267 + CA264_18030 0.65 -0.0
4,193,268 - CA264_18030 0.65 -0.3
4,193,302 - CA264_18030 0.68 -0.5
4,193,394 + CA264_18030 0.75 -0.6
4,193,395 - CA264_18030 0.75 -0.8
4,193,522 + CA264_18030 0.85 +0.3
4,193,542 + CA264_18030 0.87 +1.2
4,193,584 - -0.7
4,193,613 + +1.6
4,193,613 + -0.9
4,193,808 + -0.2
4,193,809 - +0.1
4,193,834 - -0.6
4,193,907 + CA264_18035 0.15 -0.6
4,193,908 - CA264_18035 0.15 -0.8
4,193,933 - CA264_18035 0.19 -2.0
4,193,953 + CA264_18035 0.23 -0.3
4,193,954 - CA264_18035 0.23 +0.4
4,194,021 + CA264_18035 0.34 +0.6
4,194,021 + CA264_18035 0.34 -0.3
4,194,022 - CA264_18035 0.34 +0.4
4,194,108 + CA264_18035 0.49 -0.1
4,194,109 - CA264_18035 0.49 -1.4
4,194,200 + CA264_18035 0.64 -1.4
4,194,302 - CA264_18035 0.82 -0.3
4,194,350 + CA264_18035 0.90 -2.7
4,194,351 - CA264_18035 0.90 -0.4
4,194,445 + -1.0
4,194,476 - +0.1
4,194,540 - -0.3
4,194,675 + CA264_18040 0.15 +1.2
4,194,675 + CA264_18040 0.15 +0.1
4,194,710 + CA264_18040 0.17 +0.0
4,194,711 - CA264_18040 0.17 +0.8
4,194,750 - CA264_18040 0.20 +0.5
4,194,781 - CA264_18040 0.22 -0.8
4,194,782 + CA264_18040 0.22 -0.7
4,194,782 + CA264_18040 0.22 -0.8
4,194,782 + CA264_18040 0.22 -1.6
4,194,783 - CA264_18040 0.22 +1.0
4,194,783 - CA264_18040 0.22 -1.0
4,194,848 - CA264_18040 0.27 +0.9
4,194,915 + CA264_18040 0.32 +0.4
4,194,916 - CA264_18040 0.32 +0.3
4,194,916 - CA264_18040 0.32 -0.8
4,195,019 + CA264_18040 0.40 +1.8
4,195,019 + CA264_18040 0.40 +1.5
4,195,168 + CA264_18040 0.51 -0.5
4,195,174 + CA264_18040 0.51 +0.4
4,195,302 - CA264_18040 0.60 +0.0

Or see this region's nucleotide sequence