Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16345

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16340 and CA264_16345 are separated by 4 nucleotidesCA264_16345 and CA264_16350 are separated by 11 nucleotides CA264_16340: CA264_16340 - hypothetical protein, at 3,799,447 to 3,802,284 _16340 CA264_16345: CA264_16345 - transglycosylase, at 3,802,289 to 3,804,604 _16345 CA264_16350: CA264_16350 - excinuclease ABC subunit C, at 3,804,616 to 3,806,436 _16350 Position (kb) 3802 3803 3804 3805Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3801.372 kb on + strand, within CA264_16340at 3801.373 kb on - strand, within CA264_16340at 3801.373 kb on - strand, within CA264_16340at 3801.373 kb on - strand, within CA264_16340at 3801.388 kb on + strand, within CA264_16340at 3801.388 kb on + strand, within CA264_16340at 3801.388 kb on + strand, within CA264_16340at 3801.410 kb on - strand, within CA264_16340at 3801.410 kb on - strand, within CA264_16340at 3801.467 kb on - strand, within CA264_16340at 3801.568 kb on - strand, within CA264_16340at 3801.724 kb on - strand, within CA264_16340at 3801.744 kb on + strand, within CA264_16340at 3801.950 kb on - strand, within CA264_16340at 3801.953 kb on - strand, within CA264_16340at 3801.953 kb on - strand, within CA264_16340at 3801.955 kb on + strand, within CA264_16340at 3801.955 kb on + strand, within CA264_16340at 3801.955 kb on + strand, within CA264_16340at 3801.956 kb on - strand, within CA264_16340at 3801.956 kb on - strand, within CA264_16340at 3802.010 kb on - strandat 3802.018 kb on + strandat 3802.021 kb on - strandat 3802.030 kb on + strandat 3802.033 kb on + strandat 3802.034 kb on - strandat 3802.071 kb on + strandat 3802.121 kb on + strandat 3802.132 kb on + strandat 3802.132 kb on + strandat 3802.176 kb on + strandat 3802.185 kb on - strandat 3804.602 kb on + strandat 3804.706 kb on + strandat 3804.748 kb on + strandat 3804.804 kb on + strand, within CA264_16350at 3804.870 kb on + strand, within CA264_16350at 3804.870 kb on + strand, within CA264_16350at 3804.925 kb on + strand, within CA264_16350at 3804.925 kb on + strand, within CA264_16350at 3804.926 kb on - strand, within CA264_16350at 3805.020 kb on + strand, within CA264_16350at 3805.020 kb on + strand, within CA264_16350at 3805.021 kb on - strand, within CA264_16350at 3805.082 kb on - strand, within CA264_16350at 3805.252 kb on + strand, within CA264_16350at 3805.258 kb on - strand, within CA264_16350at 3805.376 kb on + strand, within CA264_16350at 3805.514 kb on + strand, within CA264_16350at 3805.515 kb on - strand, within CA264_16350at 3805.578 kb on + strand, within CA264_16350

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,801,372 + CA264_16340 0.68 +1.9
3,801,373 - CA264_16340 0.68 +0.7
3,801,373 - CA264_16340 0.68 -0.9
3,801,373 - CA264_16340 0.68 -0.1
3,801,388 + CA264_16340 0.68 +0.0
3,801,388 + CA264_16340 0.68 -0.1
3,801,388 + CA264_16340 0.68 -0.7
3,801,410 - CA264_16340 0.69 +0.8
3,801,410 - CA264_16340 0.69 -0.3
3,801,467 - CA264_16340 0.71 -0.2
3,801,568 - CA264_16340 0.75 +3.5
3,801,724 - CA264_16340 0.80 -0.4
3,801,744 + CA264_16340 0.81 -0.5
3,801,950 - CA264_16340 0.88 +0.1
3,801,953 - CA264_16340 0.88 +0.9
3,801,953 - CA264_16340 0.88 +1.5
3,801,955 + CA264_16340 0.88 -1.1
3,801,955 + CA264_16340 0.88 -0.2
3,801,955 + CA264_16340 0.88 +0.1
3,801,956 - CA264_16340 0.88 -0.0
3,801,956 - CA264_16340 0.88 -0.2
3,802,010 - -0.4
3,802,018 + +0.2
3,802,021 - -0.2
3,802,030 + +0.3
3,802,033 + +0.5
3,802,034 - +0.0
3,802,071 + -0.1
3,802,121 + -1.1
3,802,132 + -0.2
3,802,132 + -0.3
3,802,176 + +0.2
3,802,185 - +0.5
3,804,602 + -0.2
3,804,706 + -2.2
3,804,748 + -3.6
3,804,804 + CA264_16350 0.10 -1.6
3,804,870 + CA264_16350 0.14 -3.2
3,804,870 + CA264_16350 0.14 -2.1
3,804,925 + CA264_16350 0.17 -1.9
3,804,925 + CA264_16350 0.17 -1.6
3,804,926 - CA264_16350 0.17 -2.4
3,805,020 + CA264_16350 0.22 -1.0
3,805,020 + CA264_16350 0.22 -2.3
3,805,021 - CA264_16350 0.22 +0.2
3,805,082 - CA264_16350 0.26 -0.3
3,805,252 + CA264_16350 0.35 -2.7
3,805,258 - CA264_16350 0.35 -2.6
3,805,376 + CA264_16350 0.42 -2.9
3,805,514 + CA264_16350 0.49 -2.0
3,805,515 - CA264_16350 0.49 -4.7
3,805,578 + CA264_16350 0.53 +2.5

Or see this region's nucleotide sequence