Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15420

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15415 and CA264_15420 are separated by 120 nucleotidesCA264_15420 and CA264_15425 are separated by 41 nucleotidesCA264_15425 and CA264_15430 are separated by 438 nucleotides CA264_15415: CA264_15415 - 1-aminocyclopropane-1-carboxylate deaminase, at 3,610,668 to 3,611,573 _15415 CA264_15420: CA264_15420 - hypothetical protein, at 3,611,694 to 3,614,132 _15420 CA264_15425: CA264_15425 - DUF4834 domain-containing protein, at 3,614,174 to 3,614,452 _15425 CA264_15430: CA264_15430 - carbamoyl phosphate synthase large subunit, at 3,614,891 to 3,617,704 _15430 Position (kb) 3611 3612 3613 3614 3615Strain fitness (log2 ratio) -2 -1 0 1at 3610.789 kb on + strand, within CA264_15415at 3610.789 kb on + strand, within CA264_15415at 3610.808 kb on - strand, within CA264_15415at 3610.876 kb on - strand, within CA264_15415at 3610.962 kb on + strand, within CA264_15415at 3611.168 kb on - strand, within CA264_15415at 3611.341 kb on + strand, within CA264_15415at 3611.342 kb on - strand, within CA264_15415at 3611.342 kb on - strand, within CA264_15415at 3611.409 kb on - strand, within CA264_15415at 3611.409 kb on - strand, within CA264_15415at 3611.443 kb on + strand, within CA264_15415at 3611.613 kb on + strandat 3611.615 kb on + strandat 3611.620 kb on + strandat 3611.621 kb on - strandat 3611.743 kb on + strandat 3614.132 kb on + strandat 3614.132 kb on + strandat 3614.132 kb on + strandat 3614.166 kb on + strandat 3614.181 kb on - strandat 3614.200 kb on - strandat 3614.328 kb on + strand, within CA264_15425at 3614.384 kb on + strand, within CA264_15425at 3614.404 kb on + strand, within CA264_15425at 3614.435 kb on - strandat 3614.438 kb on + strandat 3614.480 kb on + strandat 3614.484 kb on + strandat 3614.484 kb on + strandat 3614.484 kb on + strandat 3614.486 kb on + strandat 3614.487 kb on - strandat 3614.515 kb on - strandat 3614.570 kb on + strandat 3614.577 kb on + strandat 3614.577 kb on + strandat 3614.652 kb on - strandat 3614.664 kb on + strandat 3614.669 kb on + strandat 3614.670 kb on - strandat 3614.670 kb on - strandat 3614.683 kb on + strandat 3614.683 kb on + strandat 3614.683 kb on + strandat 3614.683 kb on + strandat 3614.684 kb on - strandat 3614.684 kb on - strandat 3614.685 kb on + strandat 3614.692 kb on + strandat 3614.837 kb on + strandat 3614.838 kb on - strandat 3614.878 kb on - strandat 3614.883 kb on + strandat 3614.885 kb on + strandat 3614.886 kb on - strandat 3614.886 kb on - strandat 3614.886 kb on - strandat 3614.892 kb on + strandat 3614.893 kb on - strandat 3614.938 kb on - strandat 3614.959 kb on + strandat 3615.031 kb on - strandat 3615.067 kb on + strandat 3615.067 kb on + strandat 3615.067 kb on + strandat 3615.067 kb on + strandat 3615.068 kb on - strandat 3615.082 kb on + strandat 3615.082 kb on + strandat 3615.083 kb on - strandat 3615.127 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,610,789 + CA264_15415 0.13 +0.2
3,610,789 + CA264_15415 0.13 +0.3
3,610,808 - CA264_15415 0.15 +1.6
3,610,876 - CA264_15415 0.23 -0.7
3,610,962 + CA264_15415 0.32 -0.6
3,611,168 - CA264_15415 0.55 +0.4
3,611,341 + CA264_15415 0.74 -0.1
3,611,342 - CA264_15415 0.74 +1.7
3,611,342 - CA264_15415 0.74 -0.3
3,611,409 - CA264_15415 0.82 -0.0
3,611,409 - CA264_15415 0.82 -0.2
3,611,443 + CA264_15415 0.86 +0.2
3,611,613 + +0.4
3,611,615 + -1.2
3,611,620 + -0.4
3,611,621 - -0.1
3,611,743 + -0.7
3,614,132 + -0.5
3,614,132 + -0.5
3,614,132 + -1.1
3,614,166 + -1.9
3,614,181 - -0.5
3,614,200 - -0.8
3,614,328 + CA264_15425 0.55 -1.5
3,614,384 + CA264_15425 0.75 -0.1
3,614,404 + CA264_15425 0.82 +0.0
3,614,435 - +0.2
3,614,438 + -0.1
3,614,480 + +0.1
3,614,484 + +0.6
3,614,484 + +0.2
3,614,484 + +0.9
3,614,486 + +0.5
3,614,487 - +0.3
3,614,515 - -0.3
3,614,570 + +0.5
3,614,577 + +1.3
3,614,577 + -0.0
3,614,652 - -1.8
3,614,664 + +0.7
3,614,669 + +0.0
3,614,670 - +0.4
3,614,670 - -0.2
3,614,683 + +1.0
3,614,683 + +1.5
3,614,683 + +0.6
3,614,683 + -1.1
3,614,684 - -1.3
3,614,684 - -0.8
3,614,685 + -0.0
3,614,692 + +0.7
3,614,837 + -0.1
3,614,838 - -0.3
3,614,878 - +0.0
3,614,883 + -0.7
3,614,885 + -0.7
3,614,886 - -1.0
3,614,886 - -0.2
3,614,886 - +0.7
3,614,892 + -1.1
3,614,893 - -0.1
3,614,938 - -0.6
3,614,959 + -1.9
3,615,031 - -0.1
3,615,067 + +0.6
3,615,067 + -0.5
3,615,067 + -0.8
3,615,067 + -0.9
3,615,068 - +0.2
3,615,082 + +0.3
3,615,082 + -1.0
3,615,083 - -1.7
3,615,127 - +1.7

Or see this region's nucleotide sequence