Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12335

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12330 and CA264_12335 are separated by 156 nucleotidesCA264_12335 and CA264_12340 are separated by 1 nucleotidesCA264_12340 and CA264_12345 are separated by 126 nucleotides CA264_12330: CA264_12330 - hypothetical protein, at 2,874,122 to 2,874,385 _12330 CA264_12335: CA264_12335 - pyridoxal phosphate-dependent aminotransferase, at 2,874,542 to 2,875,684 _12335 CA264_12340: CA264_12340 - acetyltransferase, at 2,875,686 to 2,876,282 _12340 CA264_12345: CA264_12345 - lipid carrier--UDP-N-acetylgalactosaminyltransferase, at 2,876,409 to 2,877,026 _12345 Position (kb) 2874 2875 2876Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2873.705 kb on + strandat 2873.705 kb on + strandat 2873.829 kb on - strandat 2873.842 kb on + strandat 2873.930 kb on + strandat 2873.930 kb on + strandat 2873.930 kb on + strandat 2873.931 kb on - strandat 2873.963 kb on - strandat 2873.972 kb on - strandat 2874.065 kb on + strandat 2874.093 kb on - strandat 2874.093 kb on - strandat 2874.096 kb on - strandat 2874.146 kb on - strandat 2874.210 kb on - strand, within CA264_12330at 2874.226 kb on + strand, within CA264_12330at 2874.384 kb on - strandat 2874.394 kb on - strandat 2874.394 kb on - strandat 2874.436 kb on + strandat 2874.438 kb on + strandat 2874.439 kb on - strandat 2874.522 kb on + strandat 2874.537 kb on + strandat 2874.538 kb on - strandat 2874.545 kb on + strandat 2874.546 kb on - strandat 2874.662 kb on - strand, within CA264_12335at 2874.809 kb on + strand, within CA264_12335at 2874.902 kb on - strand, within CA264_12335at 2874.953 kb on + strand, within CA264_12335at 2874.971 kb on - strand, within CA264_12335at 2874.971 kb on - strand, within CA264_12335at 2875.009 kb on - strand, within CA264_12335at 2875.172 kb on - strand, within CA264_12335at 2875.173 kb on + strand, within CA264_12335at 2875.173 kb on + strand, within CA264_12335at 2875.173 kb on + strand, within CA264_12335at 2875.174 kb on - strand, within CA264_12335at 2875.280 kb on + strand, within CA264_12335at 2875.280 kb on + strand, within CA264_12335at 2875.281 kb on - strand, within CA264_12335at 2875.313 kb on + strand, within CA264_12335at 2875.313 kb on + strand, within CA264_12335at 2875.313 kb on + strand, within CA264_12335at 2875.325 kb on + strand, within CA264_12335at 2875.325 kb on + strand, within CA264_12335at 2875.326 kb on - strand, within CA264_12335at 2875.326 kb on - strand, within CA264_12335at 2875.338 kb on - strand, within CA264_12335at 2875.404 kb on + strand, within CA264_12335at 2875.404 kb on + strand, within CA264_12335at 2875.450 kb on + strand, within CA264_12335at 2875.480 kb on + strand, within CA264_12335at 2875.518 kb on - strand, within CA264_12335at 2875.545 kb on - strand, within CA264_12335at 2875.548 kb on + strand, within CA264_12335at 2875.553 kb on - strand, within CA264_12335at 2875.578 kb on - strandat 2875.582 kb on + strandat 2875.610 kb on - strandat 2875.610 kb on - strandat 2875.670 kb on + strandat 2875.670 kb on + strandat 2875.685 kb on - strandat 2875.699 kb on - strandat 2875.824 kb on + strand, within CA264_12340at 2875.937 kb on + strand, within CA264_12340at 2875.937 kb on + strand, within CA264_12340at 2875.956 kb on + strand, within CA264_12340at 2876.015 kb on + strand, within CA264_12340at 2876.059 kb on - strand, within CA264_12340at 2876.128 kb on - strand, within CA264_12340at 2876.218 kb on - strand, within CA264_12340at 2876.224 kb on - strandat 2876.279 kb on - strandat 2876.305 kb on + strandat 2876.390 kb on - strandat 2876.390 kb on - strandat 2876.390 kb on - strandat 2876.507 kb on + strand, within CA264_12345at 2876.536 kb on - strand, within CA264_12345at 2876.539 kb on + strand, within CA264_12345at 2876.540 kb on - strand, within CA264_12345at 2876.540 kb on - strand, within CA264_12345at 2876.551 kb on + strand, within CA264_12345at 2876.552 kb on - strand, within CA264_12345at 2876.552 kb on - strand, within CA264_12345at 2876.555 kb on + strand, within CA264_12345at 2876.652 kb on - strand, within CA264_12345

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,873,705 + +0.6
2,873,705 + +0.7
2,873,829 - +0.1
2,873,842 + +0.1
2,873,930 + -0.5
2,873,930 + +2.2
2,873,930 + -0.6
2,873,931 - +0.1
2,873,963 - -1.2
2,873,972 - -0.0
2,874,065 + +0.4
2,874,093 - +2.3
2,874,093 - +0.1
2,874,096 - -0.3
2,874,146 - -0.5
2,874,210 - CA264_12330 0.33 -0.2
2,874,226 + CA264_12330 0.39 -0.8
2,874,384 - -0.8
2,874,394 - -0.1
2,874,394 - -0.0
2,874,436 + -0.6
2,874,438 + -0.8
2,874,439 - +0.6
2,874,522 + -0.5
2,874,537 + -2.0
2,874,538 - -0.6
2,874,545 + -0.5
2,874,546 - +1.0
2,874,662 - CA264_12335 0.10 -0.7
2,874,809 + CA264_12335 0.23 -1.2
2,874,902 - CA264_12335 0.31 +0.5
2,874,953 + CA264_12335 0.36 -0.6
2,874,971 - CA264_12335 0.38 +0.5
2,874,971 - CA264_12335 0.38 -0.5
2,875,009 - CA264_12335 0.41 +0.3
2,875,172 - CA264_12335 0.55 -2.4
2,875,173 + CA264_12335 0.55 +0.0
2,875,173 + CA264_12335 0.55 -1.2
2,875,173 + CA264_12335 0.55 +0.5
2,875,174 - CA264_12335 0.55 -1.7
2,875,280 + CA264_12335 0.65 -0.7
2,875,280 + CA264_12335 0.65 -1.6
2,875,281 - CA264_12335 0.65 -1.1
2,875,313 + CA264_12335 0.67 -1.8
2,875,313 + CA264_12335 0.67 +0.5
2,875,313 + CA264_12335 0.67 +0.2
2,875,325 + CA264_12335 0.69 -2.3
2,875,325 + CA264_12335 0.69 -2.6
2,875,326 - CA264_12335 0.69 -1.1
2,875,326 - CA264_12335 0.69 -1.4
2,875,338 - CA264_12335 0.70 -0.2
2,875,404 + CA264_12335 0.75 -2.4
2,875,404 + CA264_12335 0.75 -0.2
2,875,450 + CA264_12335 0.79 -2.6
2,875,480 + CA264_12335 0.82 -1.8
2,875,518 - CA264_12335 0.85 -0.2
2,875,545 - CA264_12335 0.88 -0.3
2,875,548 + CA264_12335 0.88 -0.7
2,875,553 - CA264_12335 0.88 -2.2
2,875,578 - -0.1
2,875,582 + -0.4
2,875,610 - -1.6
2,875,610 - -0.0
2,875,670 + -0.7
2,875,670 + +0.7
2,875,685 - -2.3
2,875,699 - +0.3
2,875,824 + CA264_12340 0.23 -0.5
2,875,937 + CA264_12340 0.42 -0.1
2,875,937 + CA264_12340 0.42 +1.7
2,875,956 + CA264_12340 0.45 +1.1
2,876,015 + CA264_12340 0.55 -0.2
2,876,059 - CA264_12340 0.62 +1.2
2,876,128 - CA264_12340 0.74 -1.2
2,876,218 - CA264_12340 0.89 +0.6
2,876,224 - -0.1
2,876,279 - -0.3
2,876,305 + +0.3
2,876,390 - -1.8
2,876,390 - -1.2
2,876,390 - +0.4
2,876,507 + CA264_12345 0.16 -1.4
2,876,536 - CA264_12345 0.21 -2.1
2,876,539 + CA264_12345 0.21 -2.5
2,876,540 - CA264_12345 0.21 -1.1
2,876,540 - CA264_12345 0.21 -0.3
2,876,551 + CA264_12345 0.23 -2.8
2,876,552 - CA264_12345 0.23 -2.9
2,876,552 - CA264_12345 0.23 +1.1
2,876,555 + CA264_12345 0.24 -1.4
2,876,652 - CA264_12345 0.39 -1.8

Or see this region's nucleotide sequence