Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11175

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11170 and CA264_11175 are separated by 98 nucleotidesCA264_11175 and CA264_11180 are separated by 385 nucleotidesCA264_11180 and CA264_11185 overlap by 20 nucleotides CA264_11170: CA264_11170 - 4-alpha-glucanotransferase, at 2,587,475 to 2,588,989 _11170 CA264_11175: CA264_11175 - hypothetical protein, at 2,589,088 to 2,589,582 _11175 CA264_11180: CA264_11180 - thioredoxin family protein, at 2,589,968 to 2,590,525 _11180 CA264_11185: CA264_11185 - hypothetical protein, at 2,590,506 to 2,591,342 _11185 Position (kb) 2589 2590Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2588.135 kb on - strand, within CA264_11170at 2588.144 kb on + strand, within CA264_11170at 2588.244 kb on - strand, within CA264_11170at 2588.397 kb on - strand, within CA264_11170at 2588.470 kb on - strand, within CA264_11170at 2588.491 kb on + strand, within CA264_11170at 2588.624 kb on + strand, within CA264_11170at 2588.624 kb on + strand, within CA264_11170at 2588.625 kb on - strand, within CA264_11170at 2588.625 kb on - strand, within CA264_11170at 2588.625 kb on - strand, within CA264_11170at 2588.660 kb on + strand, within CA264_11170at 2588.700 kb on - strand, within CA264_11170at 2588.745 kb on - strand, within CA264_11170at 2588.757 kb on - strand, within CA264_11170at 2588.832 kb on - strand, within CA264_11170at 2588.845 kb on - strandat 2588.845 kb on - strandat 2588.987 kb on + strandat 2588.987 kb on + strandat 2588.988 kb on - strandat 2589.106 kb on - strandat 2589.108 kb on - strandat 2589.238 kb on - strand, within CA264_11175at 2589.353 kb on - strand, within CA264_11175at 2589.398 kb on + strand, within CA264_11175at 2589.399 kb on - strand, within CA264_11175at 2589.399 kb on - strand, within CA264_11175at 2589.399 kb on - strand, within CA264_11175at 2589.407 kb on + strand, within CA264_11175at 2589.448 kb on - strandat 2589.495 kb on + strand, within CA264_11175at 2589.535 kb on + strandat 2589.536 kb on - strandat 2589.590 kb on + strandat 2589.677 kb on + strandat 2589.678 kb on - strandat 2589.711 kb on - strandat 2589.779 kb on - strandat 2589.779 kb on - strandat 2589.823 kb on - strandat 2589.829 kb on - strandat 2589.895 kb on + strandat 2589.896 kb on - strandat 2589.897 kb on + strandat 2589.919 kb on - strandat 2589.919 kb on - strandat 2589.927 kb on + strandat 2589.927 kb on + strandat 2589.928 kb on - strandat 2589.928 kb on - strandat 2589.928 kb on - strandat 2589.930 kb on + strandat 2589.930 kb on + strandat 2589.931 kb on - strandat 2589.937 kb on + strandat 2589.937 kb on + strandat 2589.937 kb on + strandat 2589.937 kb on + strandat 2589.938 kb on - strandat 2589.938 kb on - strandat 2589.938 kb on - strandat 2589.943 kb on - strandat 2589.943 kb on - strandat 2589.968 kb on - strandat 2590.065 kb on + strand, within CA264_11180at 2590.115 kb on + strand, within CA264_11180at 2590.115 kb on + strand, within CA264_11180at 2590.116 kb on - strand, within CA264_11180at 2590.119 kb on + strand, within CA264_11180at 2590.120 kb on - strand, within CA264_11180at 2590.120 kb on - strand, within CA264_11180at 2590.236 kb on - strand, within CA264_11180at 2590.236 kb on - strand, within CA264_11180at 2590.313 kb on + strand, within CA264_11180at 2590.327 kb on + strand, within CA264_11180at 2590.328 kb on - strand, within CA264_11180at 2590.328 kb on - strand, within CA264_11180at 2590.370 kb on + strand, within CA264_11180at 2590.371 kb on - strand, within CA264_11180at 2590.402 kb on + strand, within CA264_11180at 2590.418 kb on - strand, within CA264_11180

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,588,135 - CA264_11170 0.44 +0.1
2,588,144 + CA264_11170 0.44 -0.3
2,588,244 - CA264_11170 0.51 +1.9
2,588,397 - CA264_11170 0.61 -0.6
2,588,470 - CA264_11170 0.66 +0.2
2,588,491 + CA264_11170 0.67 -0.1
2,588,624 + CA264_11170 0.76 +0.8
2,588,624 + CA264_11170 0.76 -0.3
2,588,625 - CA264_11170 0.76 +2.0
2,588,625 - CA264_11170 0.76 -0.4
2,588,625 - CA264_11170 0.76 -0.2
2,588,660 + CA264_11170 0.78 -0.1
2,588,700 - CA264_11170 0.81 -0.0
2,588,745 - CA264_11170 0.84 -0.2
2,588,757 - CA264_11170 0.85 -1.8
2,588,832 - CA264_11170 0.90 -0.1
2,588,845 - -0.2
2,588,845 - -0.3
2,588,987 + +0.2
2,588,987 + -0.1
2,588,988 - +0.1
2,589,106 - +1.0
2,589,108 - -0.0
2,589,238 - CA264_11175 0.30 -0.6
2,589,353 - CA264_11175 0.54 +3.1
2,589,398 + CA264_11175 0.63 +0.6
2,589,399 - CA264_11175 0.63 +0.4
2,589,399 - CA264_11175 0.63 -0.5
2,589,399 - CA264_11175 0.63 -0.0
2,589,407 + CA264_11175 0.64 -0.4
2,589,448 - +1.4
2,589,495 + CA264_11175 0.82 +0.3
2,589,535 + -1.3
2,589,536 - +1.4
2,589,590 + +1.9
2,589,677 + -1.1
2,589,678 - -0.5
2,589,711 - -0.1
2,589,779 - -1.0
2,589,779 - +0.6
2,589,823 - -0.1
2,589,829 - -0.6
2,589,895 + -1.8
2,589,896 - -1.3
2,589,897 + +0.8
2,589,919 - -0.4
2,589,919 - +0.8
2,589,927 + -0.2
2,589,927 + -0.7
2,589,928 - -1.6
2,589,928 - -1.0
2,589,928 - -0.7
2,589,930 + -0.7
2,589,930 + +0.1
2,589,931 - +0.1
2,589,937 + +0.2
2,589,937 + +0.4
2,589,937 + -0.0
2,589,937 + +1.5
2,589,938 - -1.2
2,589,938 - -0.0
2,589,938 - +0.0
2,589,943 - -0.0
2,589,943 - -0.4
2,589,968 - -0.7
2,590,065 + CA264_11180 0.17 +0.0
2,590,115 + CA264_11180 0.26 +0.1
2,590,115 + CA264_11180 0.26 -0.5
2,590,116 - CA264_11180 0.27 -0.4
2,590,119 + CA264_11180 0.27 +0.5
2,590,120 - CA264_11180 0.27 +0.6
2,590,120 - CA264_11180 0.27 -0.6
2,590,236 - CA264_11180 0.48 -0.6
2,590,236 - CA264_11180 0.48 -0.9
2,590,313 + CA264_11180 0.62 +2.2
2,590,327 + CA264_11180 0.64 -0.1
2,590,328 - CA264_11180 0.65 -0.4
2,590,328 - CA264_11180 0.65 -0.6
2,590,370 + CA264_11180 0.72 -0.2
2,590,371 - CA264_11180 0.72 +0.2
2,590,402 + CA264_11180 0.78 +0.0
2,590,418 - CA264_11180 0.81 +0.6

Or see this region's nucleotide sequence