Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09390

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09385 and CA264_09390 are separated by 278 nucleotidesCA264_09390 and CA264_09395 are separated by 84 nucleotidesCA264_09395 and CA264_09400 are separated by 71 nucleotides CA264_09385: CA264_09385 - zinc-dependent metalloprotease, at 2,192,946 to 2,195,435 _09385 CA264_09390: CA264_09390 - oxidoreductase, at 2,195,714 to 2,196,664 _09390 CA264_09395: CA264_09395 - hypothetical protein, at 2,196,749 to 2,197,372 _09395 CA264_09400: CA264_09400 - hypothetical protein, at 2,197,444 to 2,197,671 _09400 Position (kb) 2195 2196 2197Strain fitness (log2 ratio) -2 -1 0 1 2at 2194.747 kb on + strand, within CA264_09385at 2194.747 kb on + strand, within CA264_09385at 2194.747 kb on + strand, within CA264_09385at 2194.747 kb on + strand, within CA264_09385at 2194.751 kb on + strand, within CA264_09385at 2194.770 kb on + strand, within CA264_09385at 2194.771 kb on - strand, within CA264_09385at 2194.808 kb on + strand, within CA264_09385at 2194.837 kb on + strand, within CA264_09385at 2194.957 kb on + strand, within CA264_09385at 2194.976 kb on + strand, within CA264_09385at 2194.977 kb on - strand, within CA264_09385at 2194.977 kb on - strand, within CA264_09385at 2195.020 kb on + strand, within CA264_09385at 2195.021 kb on - strand, within CA264_09385at 2195.021 kb on - strand, within CA264_09385at 2195.200 kb on + strandat 2195.201 kb on - strandat 2195.203 kb on + strandat 2195.204 kb on - strandat 2195.275 kb on + strandat 2195.422 kb on + strandat 2195.445 kb on - strandat 2195.457 kb on + strandat 2195.512 kb on + strandat 2195.518 kb on + strandat 2195.531 kb on + strandat 2195.531 kb on + strandat 2195.532 kb on - strandat 2195.536 kb on - strandat 2195.537 kb on + strandat 2195.551 kb on + strandat 2195.675 kb on + strandat 2195.676 kb on - strandat 2195.676 kb on - strandat 2195.683 kb on + strandat 2195.716 kb on - strandat 2195.723 kb on - strandat 2195.813 kb on + strand, within CA264_09390at 2195.813 kb on + strand, within CA264_09390at 2195.903 kb on + strand, within CA264_09390at 2195.904 kb on - strand, within CA264_09390at 2196.067 kb on - strand, within CA264_09390at 2196.067 kb on - strand, within CA264_09390at 2196.159 kb on + strand, within CA264_09390at 2196.160 kb on - strand, within CA264_09390at 2196.209 kb on + strand, within CA264_09390at 2196.209 kb on + strand, within CA264_09390at 2196.210 kb on - strand, within CA264_09390at 2196.234 kb on - strand, within CA264_09390at 2196.354 kb on + strand, within CA264_09390at 2196.355 kb on - strand, within CA264_09390at 2196.548 kb on - strand, within CA264_09390at 2196.606 kb on - strandat 2196.664 kb on + strandat 2196.664 kb on + strandat 2196.664 kb on + strandat 2196.664 kb on + strandat 2196.664 kb on + strandat 2196.669 kb on + strandat 2196.669 kb on + strandat 2196.669 kb on + strandat 2196.677 kb on + strandat 2196.677 kb on + strandat 2196.677 kb on + strandat 2196.678 kb on - strandat 2196.699 kb on + strandat 2196.699 kb on + strandat 2196.700 kb on - strandat 2196.702 kb on - strandat 2196.702 kb on - strandat 2196.825 kb on + strand, within CA264_09395at 2196.826 kb on - strand, within CA264_09395at 2196.946 kb on - strand, within CA264_09395at 2197.036 kb on + strand, within CA264_09395at 2197.056 kb on + strand, within CA264_09395at 2197.127 kb on + strand, within CA264_09395at 2197.129 kb on + strand, within CA264_09395at 2197.129 kb on + strand, within CA264_09395at 2197.129 kb on + strand, within CA264_09395at 2197.130 kb on - strand, within CA264_09395at 2197.213 kb on + strand, within CA264_09395at 2197.337 kb on - strandat 2197.367 kb on + strandat 2197.367 kb on + strandat 2197.372 kb on + strandat 2197.372 kb on + strandat 2197.373 kb on - strandat 2197.373 kb on - strandat 2197.444 kb on - strandat 2197.512 kb on - strand, within CA264_09400at 2197.519 kb on + strand, within CA264_09400at 2197.519 kb on + strand, within CA264_09400at 2197.520 kb on - strand, within CA264_09400at 2197.520 kb on - strand, within CA264_09400at 2197.575 kb on + strand, within CA264_09400at 2197.575 kb on + strand, within CA264_09400at 2197.576 kb on - strand, within CA264_09400at 2197.642 kb on + strand, within CA264_09400

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,194,747 + CA264_09385 0.72 +0.3
2,194,747 + CA264_09385 0.72 +0.3
2,194,747 + CA264_09385 0.72 -2.0
2,194,747 + CA264_09385 0.72 +0.1
2,194,751 + CA264_09385 0.72 -1.9
2,194,770 + CA264_09385 0.73 -0.0
2,194,771 - CA264_09385 0.73 -0.3
2,194,808 + CA264_09385 0.75 +0.1
2,194,837 + CA264_09385 0.76 +0.4
2,194,957 + CA264_09385 0.81 +0.2
2,194,976 + CA264_09385 0.82 +0.3
2,194,977 - CA264_09385 0.82 -0.6
2,194,977 - CA264_09385 0.82 +0.4
2,195,020 + CA264_09385 0.83 +0.1
2,195,021 - CA264_09385 0.83 +0.0
2,195,021 - CA264_09385 0.83 -0.4
2,195,200 + +0.6
2,195,201 - +0.9
2,195,203 + +0.1
2,195,204 - -0.6
2,195,275 + -1.6
2,195,422 + +0.8
2,195,445 - +1.0
2,195,457 + +0.1
2,195,512 + -0.0
2,195,518 + +0.1
2,195,531 + +0.2
2,195,531 + -0.1
2,195,532 - +2.1
2,195,536 - -0.5
2,195,537 + +1.5
2,195,551 + -0.4
2,195,675 + +1.3
2,195,676 - -1.6
2,195,676 - +0.0
2,195,683 + +0.0
2,195,716 - -0.7
2,195,723 - -0.6
2,195,813 + CA264_09390 0.10 +0.2
2,195,813 + CA264_09390 0.10 -1.0
2,195,903 + CA264_09390 0.20 -1.6
2,195,904 - CA264_09390 0.20 -0.9
2,196,067 - CA264_09390 0.37 +2.6
2,196,067 - CA264_09390 0.37 -0.2
2,196,159 + CA264_09390 0.47 -0.6
2,196,160 - CA264_09390 0.47 -0.1
2,196,209 + CA264_09390 0.52 -0.1
2,196,209 + CA264_09390 0.52 +0.8
2,196,210 - CA264_09390 0.52 +1.1
2,196,234 - CA264_09390 0.55 -0.4
2,196,354 + CA264_09390 0.67 -0.1
2,196,355 - CA264_09390 0.67 -1.1
2,196,548 - CA264_09390 0.88 -0.3
2,196,606 - +0.6
2,196,664 + -1.9
2,196,664 + +2.1
2,196,664 + -0.2
2,196,664 + -0.4
2,196,664 + -0.1
2,196,669 + +1.8
2,196,669 + -0.8
2,196,669 + +1.6
2,196,677 + -0.1
2,196,677 + +1.9
2,196,677 + +0.1
2,196,678 - +0.4
2,196,699 + -0.1
2,196,699 + +0.7
2,196,700 - -1.4
2,196,702 - -0.2
2,196,702 - +0.6
2,196,825 + CA264_09395 0.12 +0.8
2,196,826 - CA264_09395 0.12 -0.5
2,196,946 - CA264_09395 0.32 +0.9
2,197,036 + CA264_09395 0.46 -1.1
2,197,056 + CA264_09395 0.49 -0.3
2,197,127 + CA264_09395 0.61 -1.3
2,197,129 + CA264_09395 0.61 -0.3
2,197,129 + CA264_09395 0.61 +0.2
2,197,129 + CA264_09395 0.61 -0.4
2,197,130 - CA264_09395 0.61 -0.4
2,197,213 + CA264_09395 0.74 +0.4
2,197,337 - -1.5
2,197,367 + -0.4
2,197,367 + -0.6
2,197,372 + +0.1
2,197,372 + -0.4
2,197,373 - -2.5
2,197,373 - +0.3
2,197,444 - +2.2
2,197,512 - CA264_09400 0.30 -1.8
2,197,519 + CA264_09400 0.33 +0.4
2,197,519 + CA264_09400 0.33 +0.0
2,197,520 - CA264_09400 0.33 -1.2
2,197,520 - CA264_09400 0.33 +0.1
2,197,575 + CA264_09400 0.57 -0.2
2,197,575 + CA264_09400 0.57 -0.9
2,197,576 - CA264_09400 0.58 -0.2
2,197,642 + CA264_09400 0.87 -1.0

Or see this region's nucleotide sequence