Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09115

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09110 and CA264_09115 are separated by 554 nucleotidesCA264_09115 and CA264_09120 are separated by 105 nucleotides CA264_09110: CA264_09110 - mechanosensitive ion channel protein MscS, at 2,133,355 to 2,134,275 _09110 CA264_09115: CA264_09115 - hypothetical protein, at 2,134,830 to 2,135,507 _09115 CA264_09120: CA264_09120 - galactose-1-epimerase, at 2,135,613 to 2,136,797 _09120 Position (kb) 2134 2135 2136Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2133.942 kb on + strand, within CA264_09110at 2133.945 kb on + strand, within CA264_09110at 2133.946 kb on - strand, within CA264_09110at 2134.009 kb on + strand, within CA264_09110at 2134.010 kb on - strand, within CA264_09110at 2134.056 kb on - strand, within CA264_09110at 2134.092 kb on - strand, within CA264_09110at 2134.092 kb on - strand, within CA264_09110at 2134.220 kb on + strandat 2134.221 kb on - strandat 2134.290 kb on - strandat 2134.368 kb on - strandat 2134.368 kb on - strandat 2134.368 kb on - strandat 2134.368 kb on - strandat 2134.368 kb on - strandat 2134.376 kb on + strandat 2134.386 kb on + strandat 2134.387 kb on - strandat 2134.391 kb on - strandat 2134.391 kb on - strandat 2134.391 kb on - strandat 2134.391 kb on - strandat 2134.391 kb on - strandat 2134.395 kb on + strandat 2134.395 kb on + strandat 2134.396 kb on - strandat 2134.419 kb on + strandat 2134.420 kb on - strandat 2134.537 kb on - strandat 2134.580 kb on + strandat 2134.581 kb on - strandat 2134.589 kb on + strandat 2134.727 kb on + strandat 2134.815 kb on + strandat 2134.843 kb on + strandat 2134.863 kb on - strandat 2134.871 kb on + strandat 2134.872 kb on - strandat 2134.896 kb on + strandat 2134.896 kb on + strandat 2134.897 kb on - strandat 2134.905 kb on + strand, within CA264_09115at 2135.041 kb on - strand, within CA264_09115at 2135.194 kb on + strand, within CA264_09115at 2135.195 kb on - strand, within CA264_09115at 2135.195 kb on - strand, within CA264_09115at 2135.195 kb on - strand, within CA264_09115at 2135.253 kb on + strand, within CA264_09115at 2135.254 kb on - strand, within CA264_09115at 2135.313 kb on + strand, within CA264_09115at 2135.511 kb on + strandat 2135.515 kb on + strandat 2135.516 kb on - strandat 2135.516 kb on - strandat 2135.571 kb on + strandat 2135.576 kb on + strandat 2135.595 kb on - strandat 2135.612 kb on + strandat 2135.674 kb on + strandat 2135.723 kb on + strandat 2135.742 kb on - strand, within CA264_09120at 2135.805 kb on + strand, within CA264_09120at 2135.806 kb on - strand, within CA264_09120at 2135.844 kb on - strand, within CA264_09120at 2135.844 kb on - strand, within CA264_09120at 2135.850 kb on + strand, within CA264_09120at 2135.937 kb on + strand, within CA264_09120at 2136.029 kb on + strand, within CA264_09120at 2136.030 kb on - strand, within CA264_09120at 2136.030 kb on - strand, within CA264_09120at 2136.030 kb on - strand, within CA264_09120at 2136.030 kb on - strand, within CA264_09120at 2136.030 kb on - strand, within CA264_09120at 2136.071 kb on + strand, within CA264_09120at 2136.141 kb on + strand, within CA264_09120at 2136.141 kb on + strand, within CA264_09120at 2136.141 kb on + strand, within CA264_09120at 2136.142 kb on - strand, within CA264_09120at 2136.234 kb on + strand, within CA264_09120at 2136.285 kb on + strand, within CA264_09120at 2136.291 kb on - strand, within CA264_09120at 2136.354 kb on + strand, within CA264_09120at 2136.354 kb on + strand, within CA264_09120at 2136.354 kb on + strand, within CA264_09120at 2136.354 kb on + strand, within CA264_09120at 2136.355 kb on - strand, within CA264_09120at 2136.355 kb on - strand, within CA264_09120at 2136.355 kb on - strand, within CA264_09120at 2136.355 kb on - strand, within CA264_09120at 2136.356 kb on + strand, within CA264_09120at 2136.357 kb on - strand, within CA264_09120at 2136.357 kb on - strand, within CA264_09120at 2136.403 kb on + strand, within CA264_09120at 2136.477 kb on + strand, within CA264_09120at 2136.486 kb on - strand, within CA264_09120

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,133,942 + CA264_09110 0.64 -1.9
2,133,945 + CA264_09110 0.64 -1.8
2,133,946 - CA264_09110 0.64 -1.5
2,134,009 + CA264_09110 0.71 -0.9
2,134,010 - CA264_09110 0.71 -2.0
2,134,056 - CA264_09110 0.76 -0.2
2,134,092 - CA264_09110 0.80 -1.2
2,134,092 - CA264_09110 0.80 -0.4
2,134,220 + -2.3
2,134,221 - -1.6
2,134,290 - -0.6
2,134,368 - +0.1
2,134,368 - +0.1
2,134,368 - -1.1
2,134,368 - -1.1
2,134,368 - -1.2
2,134,376 + -1.2
2,134,386 + -2.4
2,134,387 - -1.0
2,134,391 - -0.4
2,134,391 - -1.2
2,134,391 - -2.6
2,134,391 - -0.3
2,134,391 - -0.9
2,134,395 + -2.7
2,134,395 + -2.0
2,134,396 - -2.4
2,134,419 + -2.2
2,134,420 - -0.4
2,134,537 - +0.3
2,134,580 + -3.7
2,134,581 - -2.5
2,134,589 + -0.0
2,134,727 + -1.7
2,134,815 + -2.3
2,134,843 + -2.6
2,134,863 - +0.2
2,134,871 + -1.6
2,134,872 - +0.0
2,134,896 + -2.9
2,134,896 + -1.9
2,134,897 - +0.2
2,134,905 + CA264_09115 0.11 -3.1
2,135,041 - CA264_09115 0.31 +0.8
2,135,194 + CA264_09115 0.54 -0.2
2,135,195 - CA264_09115 0.54 -1.6
2,135,195 - CA264_09115 0.54 -1.9
2,135,195 - CA264_09115 0.54 -1.4
2,135,253 + CA264_09115 0.62 -1.2
2,135,254 - CA264_09115 0.63 -1.6
2,135,313 + CA264_09115 0.71 -1.1
2,135,511 + -1.7
2,135,515 + -1.1
2,135,516 - -2.0
2,135,516 - -1.2
2,135,571 + -2.1
2,135,576 + -3.9
2,135,595 - -1.6
2,135,612 + -0.9
2,135,674 + -1.5
2,135,723 + -0.6
2,135,742 - CA264_09120 0.11 -1.4
2,135,805 + CA264_09120 0.16 -1.2
2,135,806 - CA264_09120 0.16 -0.7
2,135,844 - CA264_09120 0.19 +0.2
2,135,844 - CA264_09120 0.19 -0.4
2,135,850 + CA264_09120 0.20 -1.5
2,135,937 + CA264_09120 0.27 -1.1
2,136,029 + CA264_09120 0.35 -0.9
2,136,030 - CA264_09120 0.35 -2.5
2,136,030 - CA264_09120 0.35 -0.9
2,136,030 - CA264_09120 0.35 +0.7
2,136,030 - CA264_09120 0.35 +0.7
2,136,030 - CA264_09120 0.35 +0.4
2,136,071 + CA264_09120 0.39 -1.5
2,136,141 + CA264_09120 0.45 -1.5
2,136,141 + CA264_09120 0.45 -3.7
2,136,141 + CA264_09120 0.45 -2.0
2,136,142 - CA264_09120 0.45 -0.8
2,136,234 + CA264_09120 0.52 -0.5
2,136,285 + CA264_09120 0.57 -0.1
2,136,291 - CA264_09120 0.57 -0.2
2,136,354 + CA264_09120 0.63 -3.7
2,136,354 + CA264_09120 0.63 -1.5
2,136,354 + CA264_09120 0.63 -0.8
2,136,354 + CA264_09120 0.63 -1.8
2,136,355 - CA264_09120 0.63 -1.5
2,136,355 - CA264_09120 0.63 +0.5
2,136,355 - CA264_09120 0.63 -0.6
2,136,355 - CA264_09120 0.63 -0.3
2,136,356 + CA264_09120 0.63 -2.4
2,136,357 - CA264_09120 0.63 -1.7
2,136,357 - CA264_09120 0.63 -0.7
2,136,403 + CA264_09120 0.67 -1.3
2,136,477 + CA264_09120 0.73 -0.2
2,136,486 - CA264_09120 0.74 -0.3

Or see this region's nucleotide sequence