Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09110

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09105 and CA264_09110 overlap by 4 nucleotidesCA264_09110 and CA264_09115 are separated by 554 nucleotides CA264_09105: CA264_09105 - amidohydrolase, at 2,132,096 to 2,133,358 _09105 CA264_09110: CA264_09110 - mechanosensitive ion channel protein MscS, at 2,133,355 to 2,134,275 _09110 CA264_09115: CA264_09115 - hypothetical protein, at 2,134,830 to 2,135,507 _09115 Position (kb) 2133 2134 2135Strain fitness (log2 ratio) -3 -2 -1 0 1at 2132.366 kb on + strand, within CA264_09105at 2132.547 kb on + strand, within CA264_09105at 2132.601 kb on - strand, within CA264_09105at 2132.609 kb on - strand, within CA264_09105at 2132.621 kb on + strand, within CA264_09105at 2132.621 kb on + strand, within CA264_09105at 2132.622 kb on - strand, within CA264_09105at 2132.673 kb on + strand, within CA264_09105at 2132.725 kb on - strand, within CA264_09105at 2132.725 kb on - strand, within CA264_09105at 2132.726 kb on + strand, within CA264_09105at 2132.768 kb on - strand, within CA264_09105at 2132.774 kb on - strand, within CA264_09105at 2132.871 kb on + strand, within CA264_09105at 2132.871 kb on + strand, within CA264_09105at 2133.267 kb on + strandat 2133.401 kb on + strandat 2133.558 kb on - strand, within CA264_09110at 2133.721 kb on + strand, within CA264_09110at 2133.749 kb on + strand, within CA264_09110at 2133.750 kb on - strand, within CA264_09110at 2133.755 kb on + strand, within CA264_09110at 2133.942 kb on + strand, within CA264_09110at 2133.945 kb on + strand, within CA264_09110at 2133.946 kb on - strand, within CA264_09110at 2134.009 kb on + strand, within CA264_09110at 2134.010 kb on - strand, within CA264_09110at 2134.056 kb on - strand, within CA264_09110at 2134.092 kb on - strand, within CA264_09110at 2134.092 kb on - strand, within CA264_09110at 2134.220 kb on + strandat 2134.221 kb on - strandat 2134.290 kb on - strandat 2134.368 kb on - strandat 2134.368 kb on - strandat 2134.368 kb on - strandat 2134.368 kb on - strandat 2134.368 kb on - strandat 2134.376 kb on + strandat 2134.386 kb on + strandat 2134.387 kb on - strandat 2134.391 kb on - strandat 2134.391 kb on - strandat 2134.391 kb on - strandat 2134.391 kb on - strandat 2134.391 kb on - strandat 2134.395 kb on + strandat 2134.395 kb on + strandat 2134.396 kb on - strandat 2134.419 kb on + strandat 2134.420 kb on - strandat 2134.537 kb on - strandat 2134.580 kb on + strandat 2134.581 kb on - strandat 2134.589 kb on + strandat 2134.727 kb on + strandat 2134.815 kb on + strandat 2134.843 kb on + strandat 2134.863 kb on - strandat 2134.871 kb on + strandat 2134.872 kb on - strandat 2134.896 kb on + strandat 2134.896 kb on + strandat 2134.897 kb on - strandat 2134.905 kb on + strand, within CA264_09115at 2135.041 kb on - strand, within CA264_09115at 2135.194 kb on + strand, within CA264_09115at 2135.195 kb on - strand, within CA264_09115at 2135.195 kb on - strand, within CA264_09115at 2135.195 kb on - strand, within CA264_09115at 2135.253 kb on + strand, within CA264_09115at 2135.254 kb on - strand, within CA264_09115

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,132,366 + CA264_09105 0.21 +0.3
2,132,547 + CA264_09105 0.36 -0.7
2,132,601 - CA264_09105 0.40 -0.4
2,132,609 - CA264_09105 0.41 -0.1
2,132,621 + CA264_09105 0.42 -1.1
2,132,621 + CA264_09105 0.42 -1.5
2,132,622 - CA264_09105 0.42 +0.4
2,132,673 + CA264_09105 0.46 -1.7
2,132,725 - CA264_09105 0.50 +0.1
2,132,725 - CA264_09105 0.50 -1.3
2,132,726 + CA264_09105 0.50 +0.8
2,132,768 - CA264_09105 0.53 -0.7
2,132,774 - CA264_09105 0.54 +1.0
2,132,871 + CA264_09105 0.61 -1.7
2,132,871 + CA264_09105 0.61 +0.1
2,133,267 + -2.9
2,133,401 + -1.2
2,133,558 - CA264_09110 0.22 -1.3
2,133,721 + CA264_09110 0.40 -0.5
2,133,749 + CA264_09110 0.43 +0.8
2,133,750 - CA264_09110 0.43 -1.0
2,133,755 + CA264_09110 0.43 -0.9
2,133,942 + CA264_09110 0.64 -1.9
2,133,945 + CA264_09110 0.64 -1.8
2,133,946 - CA264_09110 0.64 -1.5
2,134,009 + CA264_09110 0.71 -0.9
2,134,010 - CA264_09110 0.71 -2.0
2,134,056 - CA264_09110 0.76 -0.2
2,134,092 - CA264_09110 0.80 -1.2
2,134,092 - CA264_09110 0.80 -0.4
2,134,220 + -2.3
2,134,221 - -1.6
2,134,290 - -0.6
2,134,368 - +0.1
2,134,368 - +0.1
2,134,368 - -1.1
2,134,368 - -1.1
2,134,368 - -1.2
2,134,376 + -1.2
2,134,386 + -2.4
2,134,387 - -1.0
2,134,391 - -0.4
2,134,391 - -1.2
2,134,391 - -2.6
2,134,391 - -0.3
2,134,391 - -0.9
2,134,395 + -2.7
2,134,395 + -2.0
2,134,396 - -2.4
2,134,419 + -2.2
2,134,420 - -0.4
2,134,537 - +0.3
2,134,580 + -3.7
2,134,581 - -2.5
2,134,589 + -0.0
2,134,727 + -1.7
2,134,815 + -2.3
2,134,843 + -2.6
2,134,863 - +0.2
2,134,871 + -1.6
2,134,872 - +0.0
2,134,896 + -2.9
2,134,896 + -1.9
2,134,897 - +0.2
2,134,905 + CA264_09115 0.11 -3.1
2,135,041 - CA264_09115 0.31 +0.8
2,135,194 + CA264_09115 0.54 -0.2
2,135,195 - CA264_09115 0.54 -1.6
2,135,195 - CA264_09115 0.54 -1.9
2,135,195 - CA264_09115 0.54 -1.4
2,135,253 + CA264_09115 0.62 -1.2
2,135,254 - CA264_09115 0.63 -1.6

Or see this region's nucleotide sequence