Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07920

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07910 and CA264_07915 are separated by 17 nucleotidesCA264_07915 and CA264_07920 are separated by 7 nucleotidesCA264_07920 and CA264_07925 are separated by 39 nucleotides CA264_07910: CA264_07910 - HAMP domain-containing histidine kinase, at 1,828,816 to 1,830,330 _07910 CA264_07915: CA264_07915 - two-component sensor histidine kinase, at 1,830,348 to 1,831,085 _07915 CA264_07920: CA264_07920 - response regulator, at 1,831,093 to 1,831,506 _07920 CA264_07925: CA264_07925 - hybrid sensor histidine kinase/response regulator, at 1,831,546 to 1,833,906 _07925 Position (kb) 1831 1832Strain fitness (log2 ratio) -2 -1 0 1 2at 1830.296 kb on + strandat 1830.296 kb on + strandat 1830.329 kb on - strandat 1830.437 kb on - strand, within CA264_07915at 1830.437 kb on - strand, within CA264_07915at 1830.462 kb on - strand, within CA264_07915at 1830.515 kb on - strand, within CA264_07915at 1830.568 kb on + strandat 1830.713 kb on + strand, within CA264_07915at 1830.714 kb on - strand, within CA264_07915at 1830.714 kb on - strand, within CA264_07915at 1830.717 kb on + strand, within CA264_07915at 1830.717 kb on + strand, within CA264_07915at 1830.717 kb on + strand, within CA264_07915at 1830.718 kb on - strand, within CA264_07915at 1830.718 kb on - strand, within CA264_07915at 1830.718 kb on - strand, within CA264_07915at 1830.718 kb on - strand, within CA264_07915at 1830.718 kb on - strand, within CA264_07915at 1830.742 kb on + strand, within CA264_07915at 1830.743 kb on - strand, within CA264_07915at 1830.795 kb on - strand, within CA264_07915at 1830.901 kb on - strand, within CA264_07915at 1830.929 kb on + strand, within CA264_07915at 1830.929 kb on + strand, within CA264_07915at 1830.933 kb on - strand, within CA264_07915at 1830.933 kb on - strand, within CA264_07915at 1830.946 kb on + strand, within CA264_07915at 1830.947 kb on - strand, within CA264_07915at 1830.947 kb on - strand, within CA264_07915at 1830.947 kb on - strand, within CA264_07915at 1830.951 kb on - strand, within CA264_07915at 1831.011 kb on - strand, within CA264_07915at 1831.031 kb on + strandat 1831.069 kb on + strandat 1831.070 kb on - strandat 1831.074 kb on + strandat 1831.075 kb on - strandat 1831.075 kb on - strandat 1831.084 kb on - strandat 1831.088 kb on - strandat 1831.088 kb on - strandat 1831.092 kb on + strandat 1831.106 kb on + strandat 1831.143 kb on + strand, within CA264_07920at 1831.143 kb on + strand, within CA264_07920at 1831.143 kb on + strand, within CA264_07920at 1831.146 kb on + strand, within CA264_07920at 1831.147 kb on - strand, within CA264_07920at 1831.279 kb on - strand, within CA264_07920at 1831.399 kb on + strandat 1831.407 kb on + strand, within CA264_07920at 1831.407 kb on + strand, within CA264_07920at 1831.420 kb on + strand, within CA264_07920at 1831.420 kb on + strand, within CA264_07920at 1831.420 kb on + strand, within CA264_07920at 1831.422 kb on + strand, within CA264_07920at 1831.423 kb on - strand, within CA264_07920at 1831.425 kb on - strand, within CA264_07920at 1831.427 kb on + strand, within CA264_07920at 1831.427 kb on + strand, within CA264_07920at 1831.454 kb on + strand, within CA264_07920at 1831.480 kb on + strandat 1831.481 kb on - strandat 1831.504 kb on + strandat 1831.515 kb on + strandat 1831.516 kb on - strandat 1831.516 kb on - strandat 1831.521 kb on + strandat 1831.523 kb on + strandat 1831.523 kb on + strandat 1831.523 kb on + strandat 1831.524 kb on - strandat 1831.524 kb on - strandat 1831.524 kb on - strandat 1831.524 kb on - strandat 1831.580 kb on + strandat 1831.605 kb on - strandat 1831.605 kb on - strandat 1831.634 kb on + strandat 1831.702 kb on - strandat 1831.718 kb on + strandat 1831.901 kb on - strand, within CA264_07925at 1831.946 kb on + strand, within CA264_07925at 1831.947 kb on - strand, within CA264_07925at 1831.947 kb on - strand, within CA264_07925at 1831.980 kb on - strand, within CA264_07925at 1832.038 kb on - strand, within CA264_07925at 1832.062 kb on + strand, within CA264_07925at 1832.063 kb on - strand, within CA264_07925at 1832.127 kb on - strand, within CA264_07925at 1832.155 kb on + strand, within CA264_07925at 1832.159 kb on - strand, within CA264_07925at 1832.282 kb on - strand, within CA264_07925at 1832.436 kb on - strand, within CA264_07925

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,830,296 + -0.9
1,830,296 + +0.5
1,830,329 - +0.7
1,830,437 - CA264_07915 0.12 +0.2
1,830,437 - CA264_07915 0.12 +0.6
1,830,462 - CA264_07915 0.15 +0.1
1,830,515 - CA264_07915 0.23 -2.2
1,830,568 + +0.1
1,830,713 + CA264_07915 0.49 -0.3
1,830,714 - CA264_07915 0.50 -0.7
1,830,714 - CA264_07915 0.50 -0.5
1,830,717 + CA264_07915 0.50 -0.5
1,830,717 + CA264_07915 0.50 -0.4
1,830,717 + CA264_07915 0.50 -0.2
1,830,718 - CA264_07915 0.50 +0.1
1,830,718 - CA264_07915 0.50 +0.2
1,830,718 - CA264_07915 0.50 -1.0
1,830,718 - CA264_07915 0.50 -1.2
1,830,718 - CA264_07915 0.50 -0.7
1,830,742 + CA264_07915 0.53 +1.2
1,830,743 - CA264_07915 0.54 -1.1
1,830,795 - CA264_07915 0.61 -0.2
1,830,901 - CA264_07915 0.75 -0.7
1,830,929 + CA264_07915 0.79 -0.2
1,830,929 + CA264_07915 0.79 -1.9
1,830,933 - CA264_07915 0.79 -0.8
1,830,933 - CA264_07915 0.79 -1.6
1,830,946 + CA264_07915 0.81 -0.9
1,830,947 - CA264_07915 0.81 -0.3
1,830,947 - CA264_07915 0.81 -0.6
1,830,947 - CA264_07915 0.81 +0.2
1,830,951 - CA264_07915 0.82 -0.6
1,831,011 - CA264_07915 0.90 -0.9
1,831,031 + +1.2
1,831,069 + -1.0
1,831,070 - -0.5
1,831,074 + -0.0
1,831,075 - -1.0
1,831,075 - -1.0
1,831,084 - -0.2
1,831,088 - -0.3
1,831,088 - -1.8
1,831,092 + -0.5
1,831,106 + -1.6
1,831,143 + CA264_07920 0.12 -0.7
1,831,143 + CA264_07920 0.12 -0.8
1,831,143 + CA264_07920 0.12 -2.7
1,831,146 + CA264_07920 0.13 -0.9
1,831,147 - CA264_07920 0.13 -0.5
1,831,279 - CA264_07920 0.45 -0.6
1,831,399 + +0.4
1,831,407 + CA264_07920 0.76 -0.6
1,831,407 + CA264_07920 0.76 -0.8
1,831,420 + CA264_07920 0.79 +0.1
1,831,420 + CA264_07920 0.79 -0.4
1,831,420 + CA264_07920 0.79 -0.6
1,831,422 + CA264_07920 0.79 -0.6
1,831,423 - CA264_07920 0.80 -0.9
1,831,425 - CA264_07920 0.80 -0.5
1,831,427 + CA264_07920 0.81 -0.0
1,831,427 + CA264_07920 0.81 -0.8
1,831,454 + CA264_07920 0.87 -0.2
1,831,480 + -0.7
1,831,481 - -2.2
1,831,504 + -0.5
1,831,515 + -0.3
1,831,516 - +0.3
1,831,516 - -0.3
1,831,521 + -0.3
1,831,523 + +0.1
1,831,523 + -0.5
1,831,523 + +0.5
1,831,524 - -0.8
1,831,524 - -2.1
1,831,524 - +0.4
1,831,524 - -0.2
1,831,580 + +0.4
1,831,605 - -0.9
1,831,605 - +2.1
1,831,634 + +0.1
1,831,702 - +0.3
1,831,718 + +1.3
1,831,901 - CA264_07925 0.15 +0.1
1,831,946 + CA264_07925 0.17 -0.4
1,831,947 - CA264_07925 0.17 -0.5
1,831,947 - CA264_07925 0.17 -0.5
1,831,980 - CA264_07925 0.18 -0.2
1,832,038 - CA264_07925 0.21 +0.4
1,832,062 + CA264_07925 0.22 -0.4
1,832,063 - CA264_07925 0.22 +0.6
1,832,127 - CA264_07925 0.25 -0.6
1,832,155 + CA264_07925 0.26 -1.8
1,832,159 - CA264_07925 0.26 -0.2
1,832,282 - CA264_07925 0.31 -0.4
1,832,436 - CA264_07925 0.38 -0.9

Or see this region's nucleotide sequence