Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07580

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07575 and CA264_07580 are separated by 16 nucleotidesCA264_07580 and CA264_07585 are separated by 160 nucleotides CA264_07575: CA264_07575 - agmatinase, at 1,756,023 to 1,757,093 _07575 CA264_07580: CA264_07580 - spermidine synthase, at 1,757,110 to 1,758,417 _07580 CA264_07585: CA264_07585 - hypothetical protein, at 1,758,578 to 1,759,390 _07585 Position (kb) 1757 1758 1759Strain fitness (log2 ratio) -2 -1 0 1at 1757.111 kb on + strandat 1757.202 kb on - strandat 1757.202 kb on - strandat 1757.312 kb on + strand, within CA264_07580at 1757.370 kb on - strand, within CA264_07580at 1757.378 kb on + strand, within CA264_07580at 1757.472 kb on - strand, within CA264_07580at 1757.540 kb on + strand, within CA264_07580at 1757.567 kb on + strand, within CA264_07580at 1757.724 kb on + strand, within CA264_07580at 1757.807 kb on + strand, within CA264_07580at 1757.808 kb on - strand, within CA264_07580at 1757.813 kb on + strand, within CA264_07580at 1757.813 kb on + strand, within CA264_07580at 1757.813 kb on + strand, within CA264_07580at 1757.813 kb on + strand, within CA264_07580at 1757.814 kb on - strand, within CA264_07580at 1757.900 kb on + strand, within CA264_07580at 1757.918 kb on + strand, within CA264_07580at 1757.918 kb on + strand, within CA264_07580at 1758.011 kb on - strand, within CA264_07580at 1758.013 kb on - strand, within CA264_07580at 1758.018 kb on + strand, within CA264_07580at 1758.135 kb on - strand, within CA264_07580at 1758.140 kb on + strand, within CA264_07580at 1758.140 kb on + strand, within CA264_07580at 1758.141 kb on - strand, within CA264_07580at 1758.340 kb on + strandat 1758.341 kb on - strandat 1758.407 kb on - strandat 1758.426 kb on - strandat 1758.427 kb on + strandat 1758.428 kb on - strandat 1758.428 kb on - strandat 1758.474 kb on + strandat 1758.487 kb on - strandat 1758.505 kb on + strandat 1758.505 kb on + strandat 1758.544 kb on + strandat 1758.545 kb on - strandat 1758.615 kb on - strandat 1758.748 kb on + strand, within CA264_07585at 1758.756 kb on + strand, within CA264_07585at 1758.757 kb on - strand, within CA264_07585at 1758.759 kb on + strand, within CA264_07585at 1758.760 kb on - strand, within CA264_07585at 1758.852 kb on + strand, within CA264_07585at 1758.871 kb on + strand, within CA264_07585at 1758.877 kb on - strand, within CA264_07585at 1758.935 kb on + strand, within CA264_07585at 1758.955 kb on + strand, within CA264_07585at 1759.028 kb on - strand, within CA264_07585at 1759.071 kb on + strand, within CA264_07585at 1759.159 kb on + strand, within CA264_07585at 1759.160 kb on - strand, within CA264_07585at 1759.273 kb on - strand, within CA264_07585at 1759.317 kb on - strandat 1759.410 kb on + strandat 1759.410 kb on + strandat 1759.410 kb on + strandat 1759.410 kb on + strandat 1759.411 kb on - strandat 1759.411 kb on - strandat 1759.414 kb on + strandat 1759.415 kb on - strandat 1759.415 kb on - strandat 1759.415 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,757,111 + -1.5
1,757,202 - +0.5
1,757,202 - -1.1
1,757,312 + CA264_07580 0.15 -0.4
1,757,370 - CA264_07580 0.20 -0.0
1,757,378 + CA264_07580 0.20 +0.2
1,757,472 - CA264_07580 0.28 +0.0
1,757,540 + CA264_07580 0.33 -0.2
1,757,567 + CA264_07580 0.35 +0.2
1,757,724 + CA264_07580 0.47 +1.6
1,757,807 + CA264_07580 0.53 -0.0
1,757,808 - CA264_07580 0.53 +0.1
1,757,813 + CA264_07580 0.54 -0.3
1,757,813 + CA264_07580 0.54 +0.2
1,757,813 + CA264_07580 0.54 -0.3
1,757,813 + CA264_07580 0.54 +1.0
1,757,814 - CA264_07580 0.54 +0.2
1,757,900 + CA264_07580 0.60 +0.2
1,757,918 + CA264_07580 0.62 +0.3
1,757,918 + CA264_07580 0.62 -0.8
1,758,011 - CA264_07580 0.69 +0.0
1,758,013 - CA264_07580 0.69 +0.0
1,758,018 + CA264_07580 0.69 +0.7
1,758,135 - CA264_07580 0.78 -0.1
1,758,140 + CA264_07580 0.79 +0.2
1,758,140 + CA264_07580 0.79 +0.3
1,758,141 - CA264_07580 0.79 +1.5
1,758,340 + -0.8
1,758,341 - +0.1
1,758,407 - -2.4
1,758,426 - +0.2
1,758,427 + +1.1
1,758,428 - -0.8
1,758,428 - +0.8
1,758,474 + -1.2
1,758,487 - -0.8
1,758,505 + -0.2
1,758,505 + -1.1
1,758,544 + +0.6
1,758,545 - +0.1
1,758,615 - +0.6
1,758,748 + CA264_07585 0.21 +0.4
1,758,756 + CA264_07585 0.22 +0.8
1,758,757 - CA264_07585 0.22 -1.5
1,758,759 + CA264_07585 0.22 -0.9
1,758,760 - CA264_07585 0.22 +0.1
1,758,852 + CA264_07585 0.34 +0.7
1,758,871 + CA264_07585 0.36 -1.1
1,758,877 - CA264_07585 0.37 +0.9
1,758,935 + CA264_07585 0.44 -1.6
1,758,955 + CA264_07585 0.46 -0.9
1,759,028 - CA264_07585 0.55 +0.4
1,759,071 + CA264_07585 0.61 -0.2
1,759,159 + CA264_07585 0.71 +1.1
1,759,160 - CA264_07585 0.72 +0.5
1,759,273 - CA264_07585 0.85 +0.1
1,759,317 - +1.5
1,759,410 + +0.2
1,759,410 + -0.1
1,759,410 + +0.1
1,759,410 + +0.0
1,759,411 - -1.8
1,759,411 - -0.8
1,759,414 + +0.4
1,759,415 - +0.5
1,759,415 - -0.2
1,759,415 - +0.3

Or see this region's nucleotide sequence