Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06530

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06520 and CA264_06525 overlap by 11 nucleotidesCA264_06525 and CA264_06530 are separated by 180 nucleotidesCA264_06530 and CA264_06535 are separated by 21 nucleotides CA264_06520: CA264_06520 - DUF4440 domain-containing protein, at 1,506,156 to 1,506,605 _06520 CA264_06525: CA264_06525 - monofunctional biosynthetic peptidoglycan transglycosylase, at 1,506,595 to 1,507,329 _06525 CA264_06530: CA264_06530 - peptidase, at 1,507,510 to 1,508,154 _06530 CA264_06535: CA264_06535 - metallophosphoesterase, at 1,508,176 to 1,509,390 _06535 Position (kb) 1507 1508 1509Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1506.528 kb on + strand, within CA264_06520at 1506.529 kb on - strand, within CA264_06520at 1506.571 kb on - strandat 1506.571 kb on - strandat 1506.589 kb on + strandat 1506.589 kb on + strandat 1506.633 kb on - strandat 1506.633 kb on - strandat 1506.633 kb on - strandat 1506.745 kb on + strand, within CA264_06525at 1506.794 kb on + strand, within CA264_06525at 1506.794 kb on - strand, within CA264_06525at 1506.795 kb on - strand, within CA264_06525at 1506.854 kb on + strand, within CA264_06525at 1506.854 kb on + strand, within CA264_06525at 1506.856 kb on + strand, within CA264_06525at 1506.856 kb on + strand, within CA264_06525at 1506.856 kb on + strand, within CA264_06525at 1506.856 kb on + strand, within CA264_06525at 1506.857 kb on - strand, within CA264_06525at 1506.903 kb on + strand, within CA264_06525at 1506.904 kb on - strand, within CA264_06525at 1506.904 kb on - strand, within CA264_06525at 1506.932 kb on + strand, within CA264_06525at 1506.933 kb on - strand, within CA264_06525at 1506.999 kb on + strand, within CA264_06525at 1507.038 kb on + strand, within CA264_06525at 1507.038 kb on + strand, within CA264_06525at 1507.105 kb on + strand, within CA264_06525at 1507.106 kb on - strand, within CA264_06525at 1507.140 kb on + strand, within CA264_06525at 1507.270 kb on - strandat 1507.282 kb on + strandat 1507.298 kb on - strandat 1507.298 kb on - strandat 1507.388 kb on + strandat 1507.388 kb on + strandat 1507.388 kb on + strandat 1507.394 kb on + strandat 1507.394 kb on + strandat 1507.394 kb on + strandat 1507.395 kb on - strandat 1507.477 kb on + strandat 1507.478 kb on - strandat 1507.483 kb on + strandat 1507.484 kb on - strandat 1507.493 kb on - strandat 1507.496 kb on + strandat 1507.496 kb on + strandat 1507.496 kb on + strandat 1507.496 kb on + strandat 1507.496 kb on + strandat 1507.496 kb on + strandat 1507.497 kb on - strandat 1507.497 kb on - strandat 1507.497 kb on - strandat 1507.497 kb on - strandat 1507.523 kb on + strandat 1507.523 kb on + strandat 1507.529 kb on - strandat 1507.676 kb on + strand, within CA264_06530at 1507.677 kb on - strand, within CA264_06530at 1507.811 kb on - strand, within CA264_06530at 1507.832 kb on + strand, within CA264_06530at 1507.832 kb on + strand, within CA264_06530at 1507.836 kb on - strand, within CA264_06530at 1507.889 kb on + strand, within CA264_06530at 1508.018 kb on + strand, within CA264_06530at 1508.018 kb on + strand, within CA264_06530at 1508.048 kb on + strand, within CA264_06530at 1508.048 kb on + strand, within CA264_06530at 1508.058 kb on - strand, within CA264_06530at 1508.173 kb on + strandat 1508.174 kb on - strandat 1508.186 kb on - strandat 1508.218 kb on - strandat 1508.218 kb on - strandat 1508.250 kb on + strandat 1508.250 kb on + strandat 1508.250 kb on + strandat 1508.251 kb on - strandat 1508.251 kb on - strandat 1508.251 kb on - strandat 1508.251 kb on - strandat 1508.251 kb on - strandat 1508.251 kb on - strandat 1508.465 kb on - strand, within CA264_06535at 1508.542 kb on - strand, within CA264_06535at 1508.674 kb on + strand, within CA264_06535at 1508.675 kb on - strand, within CA264_06535at 1508.675 kb on - strand, within CA264_06535at 1508.704 kb on - strand, within CA264_06535at 1508.745 kb on + strand, within CA264_06535at 1508.746 kb on - strand, within CA264_06535at 1508.794 kb on + strand, within CA264_06535at 1508.794 kb on + strandat 1508.817 kb on - strand, within CA264_06535at 1508.817 kb on - strand, within CA264_06535at 1508.878 kb on - strand, within CA264_06535at 1508.878 kb on - strand, within CA264_06535at 1508.934 kb on - strand, within CA264_06535at 1508.976 kb on - strand, within CA264_06535at 1508.977 kb on + strand, within CA264_06535at 1508.977 kb on + strand, within CA264_06535at 1508.977 kb on + strand, within CA264_06535at 1508.977 kb on + strand, within CA264_06535at 1508.978 kb on - strand, within CA264_06535at 1508.978 kb on - strand, within CA264_06535at 1508.978 kb on - strand, within CA264_06535at 1508.978 kb on - strand, within CA264_06535at 1508.978 kb on - strand, within CA264_06535at 1509.061 kb on + strand, within CA264_06535at 1509.105 kb on + strand, within CA264_06535at 1509.105 kb on + strand, within CA264_06535at 1509.105 kb on + strand, within CA264_06535at 1509.106 kb on - strand, within CA264_06535at 1509.106 kb on - strand, within CA264_06535at 1509.118 kb on + strand, within CA264_06535at 1509.118 kb on + strand, within CA264_06535

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,506,528 + CA264_06520 0.83 +0.1
1,506,529 - CA264_06520 0.83 -0.3
1,506,571 - -0.4
1,506,571 - -1.2
1,506,589 + -1.2
1,506,589 + +0.4
1,506,633 - -0.2
1,506,633 - -0.1
1,506,633 - -0.5
1,506,745 + CA264_06525 0.20 -0.8
1,506,794 + CA264_06525 0.27 +1.4
1,506,794 - CA264_06525 0.27 -0.3
1,506,795 - CA264_06525 0.27 -0.0
1,506,854 + CA264_06525 0.35 -1.8
1,506,854 + CA264_06525 0.35 +0.2
1,506,856 + CA264_06525 0.36 -0.5
1,506,856 + CA264_06525 0.36 +0.3
1,506,856 + CA264_06525 0.36 -1.2
1,506,856 + CA264_06525 0.36 -0.8
1,506,857 - CA264_06525 0.36 -0.9
1,506,903 + CA264_06525 0.42 -1.1
1,506,904 - CA264_06525 0.42 -0.4
1,506,904 - CA264_06525 0.42 -1.2
1,506,932 + CA264_06525 0.46 -1.8
1,506,933 - CA264_06525 0.46 -2.2
1,506,999 + CA264_06525 0.55 -1.6
1,507,038 + CA264_06525 0.60 -0.5
1,507,038 + CA264_06525 0.60 -0.6
1,507,105 + CA264_06525 0.69 -2.3
1,507,106 - CA264_06525 0.70 +0.3
1,507,140 + CA264_06525 0.74 +0.1
1,507,270 - -0.9
1,507,282 + -3.2
1,507,298 - -0.8
1,507,298 - +0.5
1,507,388 + -0.6
1,507,388 + -0.4
1,507,388 + +1.7
1,507,394 + +1.2
1,507,394 + +0.0
1,507,394 + -0.4
1,507,395 - -1.7
1,507,477 + +0.2
1,507,478 - +1.1
1,507,483 + -0.8
1,507,484 - -0.8
1,507,493 - +0.2
1,507,496 + -1.0
1,507,496 + +1.0
1,507,496 + +0.8
1,507,496 + -1.6
1,507,496 + -0.4
1,507,496 + -0.6
1,507,497 - -1.5
1,507,497 - -1.2
1,507,497 - -1.9
1,507,497 - -2.4
1,507,523 + -0.7
1,507,523 + -0.5
1,507,529 - -0.2
1,507,676 + CA264_06530 0.26 +0.1
1,507,677 - CA264_06530 0.26 +0.5
1,507,811 - CA264_06530 0.47 +1.5
1,507,832 + CA264_06530 0.50 -0.6
1,507,832 + CA264_06530 0.50 +0.5
1,507,836 - CA264_06530 0.51 -0.9
1,507,889 + CA264_06530 0.59 +0.6
1,508,018 + CA264_06530 0.79 +0.7
1,508,018 + CA264_06530 0.79 -0.2
1,508,048 + CA264_06530 0.83 +0.1
1,508,048 + CA264_06530 0.83 -0.7
1,508,058 - CA264_06530 0.85 +2.4
1,508,173 + -0.3
1,508,174 - -2.8
1,508,186 - -0.9
1,508,218 - +0.7
1,508,218 - -0.7
1,508,250 + +0.1
1,508,250 + +0.2
1,508,250 + +0.1
1,508,251 - +1.1
1,508,251 - -0.3
1,508,251 - -0.2
1,508,251 - -1.3
1,508,251 - -1.3
1,508,251 - +0.3
1,508,465 - CA264_06535 0.24 +0.3
1,508,542 - CA264_06535 0.30 +1.4
1,508,674 + CA264_06535 0.41 -0.5
1,508,675 - CA264_06535 0.41 -0.1
1,508,675 - CA264_06535 0.41 +1.0
1,508,704 - CA264_06535 0.43 +0.8
1,508,745 + CA264_06535 0.47 -1.6
1,508,746 - CA264_06535 0.47 +0.3
1,508,794 + CA264_06535 0.51 -0.2
1,508,794 + -0.2
1,508,817 - CA264_06535 0.53 -0.2
1,508,817 - CA264_06535 0.53 +1.2
1,508,878 - CA264_06535 0.58 +0.7
1,508,878 - CA264_06535 0.58 +0.3
1,508,934 - CA264_06535 0.62 -0.4
1,508,976 - CA264_06535 0.66 -0.0
1,508,977 + CA264_06535 0.66 +0.2
1,508,977 + CA264_06535 0.66 +0.1
1,508,977 + CA264_06535 0.66 -0.5
1,508,977 + CA264_06535 0.66 +0.7
1,508,978 - CA264_06535 0.66 +0.2
1,508,978 - CA264_06535 0.66 -0.7
1,508,978 - CA264_06535 0.66 +0.9
1,508,978 - CA264_06535 0.66 -0.5
1,508,978 - CA264_06535 0.66 -0.7
1,509,061 + CA264_06535 0.73 +0.4
1,509,105 + CA264_06535 0.76 +0.1
1,509,105 + CA264_06535 0.76 -0.4
1,509,105 + CA264_06535 0.76 +1.1
1,509,106 - CA264_06535 0.77 -0.5
1,509,106 - CA264_06535 0.77 +0.5
1,509,118 + CA264_06535 0.78 +0.1
1,509,118 + CA264_06535 0.78 -0.2

Or see this region's nucleotide sequence