Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06495

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06490 and CA264_06495 are separated by 226 nucleotidesCA264_06495 and CA264_06500 are separated by 356 nucleotides CA264_06490: CA264_06490 - DNA topoisomerase I, at 1,499,629 to 1,500,714 _06490 CA264_06495: CA264_06495 - hypothetical protein, at 1,500,941 to 1,501,345 _06495 CA264_06500: CA264_06500 - peptidase M48, at 1,501,702 to 1,502,535 _06500 Position (kb) 1500 1501 1502Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1499.959 kb on - strand, within CA264_06490at 1499.988 kb on - strand, within CA264_06490at 1499.988 kb on - strand, within CA264_06490at 1499.994 kb on + strand, within CA264_06490at 1499.995 kb on - strand, within CA264_06490at 1500.010 kb on + strand, within CA264_06490at 1500.010 kb on + strand, within CA264_06490at 1500.011 kb on - strand, within CA264_06490at 1500.041 kb on + strand, within CA264_06490at 1500.042 kb on - strand, within CA264_06490at 1500.042 kb on - strand, within CA264_06490at 1500.050 kb on - strand, within CA264_06490at 1500.145 kb on - strand, within CA264_06490at 1500.151 kb on - strand, within CA264_06490at 1500.201 kb on + strand, within CA264_06490at 1500.318 kb on + strand, within CA264_06490at 1500.318 kb on + strand, within CA264_06490at 1500.318 kb on + strand, within CA264_06490at 1500.390 kb on + strand, within CA264_06490at 1500.423 kb on - strand, within CA264_06490at 1500.496 kb on + strand, within CA264_06490at 1500.497 kb on - strand, within CA264_06490at 1500.580 kb on + strand, within CA264_06490at 1500.587 kb on + strand, within CA264_06490at 1500.627 kb on + strandat 1500.628 kb on - strandat 1500.630 kb on + strandat 1500.630 kb on + strandat 1500.630 kb on + strandat 1500.639 kb on + strandat 1500.639 kb on + strandat 1500.640 kb on - strandat 1500.640 kb on - strandat 1500.640 kb on - strandat 1500.640 kb on - strandat 1500.640 kb on - strandat 1500.647 kb on - strandat 1500.683 kb on + strandat 1500.683 kb on + strandat 1500.683 kb on + strandat 1500.684 kb on - strandat 1500.685 kb on + strandat 1500.685 kb on + strandat 1500.685 kb on + strandat 1500.686 kb on - strandat 1500.686 kb on - strandat 1500.695 kb on - strandat 1500.695 kb on - strandat 1500.754 kb on + strandat 1500.783 kb on + strandat 1500.783 kb on + strandat 1500.784 kb on - strandat 1500.810 kb on - strandat 1500.810 kb on - strandat 1500.813 kb on + strandat 1500.813 kb on + strandat 1500.814 kb on - strandat 1500.814 kb on - strandat 1500.878 kb on + strandat 1500.879 kb on - strandat 1500.926 kb on + strandat 1500.931 kb on - strandat 1500.938 kb on + strandat 1500.939 kb on - strandat 1501.045 kb on + strand, within CA264_06495at 1501.045 kb on + strand, within CA264_06495at 1501.046 kb on - strand, within CA264_06495at 1501.046 kb on - strand, within CA264_06495at 1501.048 kb on + strand, within CA264_06495at 1501.049 kb on - strand, within CA264_06495at 1501.120 kb on + strand, within CA264_06495at 1501.181 kb on + strand, within CA264_06495at 1501.201 kb on + strand, within CA264_06495at 1501.206 kb on + strand, within CA264_06495at 1501.206 kb on + strand, within CA264_06495at 1501.207 kb on - strand, within CA264_06495at 1501.297 kb on + strand, within CA264_06495at 1501.330 kb on - strandat 1501.330 kb on - strandat 1501.431 kb on - strandat 1501.497 kb on - strandat 1501.628 kb on - strandat 1501.631 kb on + strandat 1501.631 kb on + strandat 1501.631 kb on + strandat 1501.631 kb on + strandat 1501.651 kb on + strandat 1501.652 kb on - strandat 1501.811 kb on + strand, within CA264_06500at 1501.811 kb on + strand, within CA264_06500at 1501.811 kb on + strand, within CA264_06500at 1501.812 kb on - strand, within CA264_06500at 1501.812 kb on - strand, within CA264_06500at 1501.812 kb on - strand, within CA264_06500at 1501.812 kb on - strand, within CA264_06500at 1501.930 kb on - strand, within CA264_06500at 1501.930 kb on - strand, within CA264_06500at 1501.933 kb on - strand, within CA264_06500at 1501.933 kb on - strand, within CA264_06500at 1501.934 kb on + strand, within CA264_06500at 1501.934 kb on + strand, within CA264_06500at 1501.934 kb on + strand, within CA264_06500at 1501.946 kb on + strand, within CA264_06500at 1501.947 kb on - strand, within CA264_06500at 1501.966 kb on + strand, within CA264_06500at 1501.967 kb on - strand, within CA264_06500at 1501.967 kb on - strand, within CA264_06500at 1501.968 kb on + strand, within CA264_06500at 1502.051 kb on - strand, within CA264_06500at 1502.106 kb on - strand, within CA264_06500at 1502.148 kb on - strand, within CA264_06500at 1502.156 kb on + strand, within CA264_06500at 1502.269 kb on - strand, within CA264_06500at 1502.329 kb on + strand, within CA264_06500at 1502.329 kb on + strand, within CA264_06500at 1502.330 kb on - strand, within CA264_06500at 1502.330 kb on - strand, within CA264_06500at 1502.332 kb on + strand, within CA264_06500

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,499,959 - CA264_06490 0.30 -1.4
1,499,988 - CA264_06490 0.33 -0.3
1,499,988 - CA264_06490 0.33 +0.0
1,499,994 + CA264_06490 0.34 +0.6
1,499,995 - CA264_06490 0.34 +0.2
1,500,010 + CA264_06490 0.35 +0.0
1,500,010 + CA264_06490 0.35 -1.1
1,500,011 - CA264_06490 0.35 -0.6
1,500,041 + CA264_06490 0.38 -0.2
1,500,042 - CA264_06490 0.38 +0.3
1,500,042 - CA264_06490 0.38 +3.0
1,500,050 - CA264_06490 0.39 -0.3
1,500,145 - CA264_06490 0.48 -0.8
1,500,151 - CA264_06490 0.48 -0.3
1,500,201 + CA264_06490 0.53 -0.4
1,500,318 + CA264_06490 0.63 -0.2
1,500,318 + CA264_06490 0.63 +0.9
1,500,318 + CA264_06490 0.63 -0.3
1,500,390 + CA264_06490 0.70 +0.6
1,500,423 - CA264_06490 0.73 +0.3
1,500,496 + CA264_06490 0.80 -0.8
1,500,497 - CA264_06490 0.80 -0.2
1,500,580 + CA264_06490 0.88 +0.8
1,500,587 + CA264_06490 0.88 +0.4
1,500,627 + -0.5
1,500,628 - -0.0
1,500,630 + -0.6
1,500,630 + -0.5
1,500,630 + -0.0
1,500,639 + -1.2
1,500,639 + -0.3
1,500,640 - -1.2
1,500,640 - +0.2
1,500,640 - -0.2
1,500,640 - -1.3
1,500,640 - +0.0
1,500,647 - -1.1
1,500,683 + -0.6
1,500,683 + -0.1
1,500,683 + +0.3
1,500,684 - +0.1
1,500,685 + -0.6
1,500,685 + +0.3
1,500,685 + -0.3
1,500,686 - -0.5
1,500,686 - -1.3
1,500,695 - +0.1
1,500,695 - +1.1
1,500,754 + -0.5
1,500,783 + -1.1
1,500,783 + +0.3
1,500,784 - -0.2
1,500,810 - +0.3
1,500,810 - -0.5
1,500,813 + -0.1
1,500,813 + +0.1
1,500,814 - -1.1
1,500,814 - -0.5
1,500,878 + +0.2
1,500,879 - -0.7
1,500,926 + -0.3
1,500,931 - -0.2
1,500,938 + -0.2
1,500,939 - -0.8
1,501,045 + CA264_06495 0.26 +0.8
1,501,045 + CA264_06495 0.26 +0.6
1,501,046 - CA264_06495 0.26 -0.2
1,501,046 - CA264_06495 0.26 -2.5
1,501,048 + CA264_06495 0.26 -0.2
1,501,049 - CA264_06495 0.27 +0.1
1,501,120 + CA264_06495 0.44 +0.1
1,501,181 + CA264_06495 0.59 +0.1
1,501,201 + CA264_06495 0.64 -1.3
1,501,206 + CA264_06495 0.65 -0.3
1,501,206 + CA264_06495 0.65 -0.8
1,501,207 - CA264_06495 0.66 +0.4
1,501,297 + CA264_06495 0.88 +1.7
1,501,330 - +0.8
1,501,330 - -0.1
1,501,431 - +0.3
1,501,497 - -1.0
1,501,628 - -0.4
1,501,631 + -0.7
1,501,631 + -1.2
1,501,631 + -0.1
1,501,631 + +0.2
1,501,651 + +0.1
1,501,652 - -0.7
1,501,811 + CA264_06500 0.13 +0.5
1,501,811 + CA264_06500 0.13 +0.5
1,501,811 + CA264_06500 0.13 -0.1
1,501,812 - CA264_06500 0.13 +0.9
1,501,812 - CA264_06500 0.13 +0.4
1,501,812 - CA264_06500 0.13 -0.9
1,501,812 - CA264_06500 0.13 +0.2
1,501,930 - CA264_06500 0.27 +0.2
1,501,930 - CA264_06500 0.27 -0.3
1,501,933 - CA264_06500 0.28 +2.1
1,501,933 - CA264_06500 0.28 +0.7
1,501,934 + CA264_06500 0.28 +0.1
1,501,934 + CA264_06500 0.28 +1.8
1,501,934 + CA264_06500 0.28 -0.9
1,501,946 + CA264_06500 0.29 +0.3
1,501,947 - CA264_06500 0.29 +0.4
1,501,966 + CA264_06500 0.32 +1.8
1,501,967 - CA264_06500 0.32 +0.4
1,501,967 - CA264_06500 0.32 -0.7
1,501,968 + CA264_06500 0.32 -0.2
1,502,051 - CA264_06500 0.42 +1.3
1,502,106 - CA264_06500 0.48 -0.8
1,502,148 - CA264_06500 0.53 +0.3
1,502,156 + CA264_06500 0.54 -1.6
1,502,269 - CA264_06500 0.68 -0.2
1,502,329 + CA264_06500 0.75 -0.3
1,502,329 + CA264_06500 0.75 -0.0
1,502,330 - CA264_06500 0.75 -0.1
1,502,330 - CA264_06500 0.75 +0.5
1,502,332 + CA264_06500 0.76 -0.2

Or see this region's nucleotide sequence