Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05970

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05965 and CA264_05970 are separated by 77 nucleotidesCA264_05970 and CA264_05975 are separated by 268 nucleotidesCA264_05975 and CA264_05980 are separated by 207 nucleotides CA264_05965: CA264_05965 - N-acetylmuramoyl-L-alanine amidase, at 1,393,813 to 1,394,853 _05965 CA264_05970: CA264_05970 - hypothetical protein, at 1,394,931 to 1,395,317 _05970 CA264_05975: CA264_05975 - hypothetical protein, at 1,395,586 to 1,395,999 _05975 CA264_05980: CA264_05980 - cytochrome P450, at 1,396,207 to 1,397,478 _05980 Position (kb) 1394 1395 1396Strain fitness (log2 ratio) -3 -2 -1 0 1at 1393.931 kb on - strand, within CA264_05965at 1393.931 kb on - strand, within CA264_05965at 1393.983 kb on + strand, within CA264_05965at 1393.984 kb on - strand, within CA264_05965at 1394.016 kb on + strand, within CA264_05965at 1394.088 kb on + strand, within CA264_05965at 1394.141 kb on - strand, within CA264_05965at 1394.183 kb on + strand, within CA264_05965at 1394.184 kb on - strand, within CA264_05965at 1394.184 kb on - strand, within CA264_05965at 1394.185 kb on + strand, within CA264_05965at 1394.185 kb on + strand, within CA264_05965at 1394.186 kb on - strand, within CA264_05965at 1394.188 kb on + strand, within CA264_05965at 1394.188 kb on + strand, within CA264_05965at 1394.189 kb on - strand, within CA264_05965at 1394.189 kb on - strand, within CA264_05965at 1394.236 kb on + strand, within CA264_05965at 1394.246 kb on - strand, within CA264_05965at 1394.246 kb on - strand, within CA264_05965at 1394.266 kb on + strand, within CA264_05965at 1394.272 kb on + strand, within CA264_05965at 1394.272 kb on + strand, within CA264_05965at 1394.272 kb on + strand, within CA264_05965at 1394.273 kb on - strand, within CA264_05965at 1394.273 kb on - strand, within CA264_05965at 1394.273 kb on - strand, within CA264_05965at 1394.327 kb on - strand, within CA264_05965at 1394.337 kb on - strand, within CA264_05965at 1394.433 kb on + strand, within CA264_05965at 1394.462 kb on + strand, within CA264_05965at 1394.463 kb on - strand, within CA264_05965at 1394.474 kb on - strand, within CA264_05965at 1394.533 kb on - strand, within CA264_05965at 1394.560 kb on + strand, within CA264_05965at 1394.630 kb on - strand, within CA264_05965at 1394.669 kb on + strand, within CA264_05965at 1394.670 kb on - strand, within CA264_05965at 1394.689 kb on + strand, within CA264_05965at 1394.690 kb on - strand, within CA264_05965at 1394.697 kb on + strand, within CA264_05965at 1394.701 kb on + strand, within CA264_05965at 1394.727 kb on - strand, within CA264_05965at 1394.820 kb on + strandat 1394.821 kb on - strandat 1394.830 kb on + strandat 1394.831 kb on - strandat 1394.833 kb on - strandat 1394.852 kb on - strandat 1394.852 kb on - strandat 1394.852 kb on - strandat 1394.858 kb on + strandat 1394.859 kb on - strandat 1394.862 kb on + strandat 1394.893 kb on + strandat 1394.932 kb on + strandat 1394.944 kb on + strandat 1394.950 kb on + strandat 1394.968 kb on - strandat 1394.970 kb on - strand, within CA264_05970at 1394.970 kb on - strand, within CA264_05970at 1395.083 kb on - strand, within CA264_05970at 1395.090 kb on + strand, within CA264_05970at 1395.090 kb on + strand, within CA264_05970at 1395.090 kb on + strand, within CA264_05970at 1395.090 kb on + strand, within CA264_05970at 1395.090 kb on + strand, within CA264_05970at 1395.091 kb on - strand, within CA264_05970at 1395.091 kb on - strand, within CA264_05970at 1395.091 kb on - strand, within CA264_05970at 1395.094 kb on + strand, within CA264_05970at 1395.199 kb on + strand, within CA264_05970at 1395.200 kb on - strand, within CA264_05970at 1395.206 kb on - strand, within CA264_05970at 1395.206 kb on - strand, within CA264_05970at 1395.250 kb on - strand, within CA264_05970at 1395.304 kb on - strandat 1395.311 kb on + strandat 1395.312 kb on - strandat 1395.429 kb on + strandat 1395.477 kb on + strandat 1395.495 kb on - strandat 1395.505 kb on + strandat 1395.532 kb on - strandat 1395.532 kb on - strandat 1395.535 kb on - strandat 1395.535 kb on - strandat 1395.535 kb on - strandat 1395.535 kb on - strandat 1395.537 kb on + strandat 1395.538 kb on - strandat 1395.538 kb on - strandat 1395.538 kb on - strandat 1395.538 kb on - strandat 1395.538 kb on - strandat 1395.547 kb on + strandat 1395.558 kb on - strandat 1395.572 kb on + strandat 1395.575 kb on + strandat 1395.575 kb on + strandat 1395.633 kb on + strand, within CA264_05975at 1395.633 kb on + strand, within CA264_05975at 1395.717 kb on + strand, within CA264_05975at 1395.717 kb on + strand, within CA264_05975at 1395.718 kb on - strand, within CA264_05975at 1395.718 kb on - strand, within CA264_05975at 1395.721 kb on + strand, within CA264_05975at 1395.721 kb on + strand, within CA264_05975at 1395.721 kb on + strand, within CA264_05975at 1395.721 kb on + strand, within CA264_05975at 1395.721 kb on + strand, within CA264_05975at 1395.721 kb on + strand, within CA264_05975at 1395.721 kb on + strand, within CA264_05975at 1395.721 kb on + strand, within CA264_05975at 1395.722 kb on - strand, within CA264_05975at 1395.722 kb on - strand, within CA264_05975at 1395.737 kb on + strand, within CA264_05975at 1395.737 kb on + strand, within CA264_05975at 1395.791 kb on + strand, within CA264_05975at 1395.878 kb on + strand, within CA264_05975at 1395.891 kb on + strand, within CA264_05975at 1395.984 kb on + strandat 1395.994 kb on - strandat 1395.997 kb on + strandat 1395.998 kb on - strandat 1395.998 kb on - strandat 1396.044 kb on - strandat 1396.135 kb on + strandat 1396.186 kb on - strandat 1396.202 kb on + strandat 1396.202 kb on + strandat 1396.203 kb on - strandat 1396.203 kb on - strandat 1396.203 kb on - strandat 1396.310 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,393,931 - CA264_05965 0.11 +1.1
1,393,931 - CA264_05965 0.11 +0.5
1,393,983 + CA264_05965 0.16 +0.3
1,393,984 - CA264_05965 0.16 -0.3
1,394,016 + CA264_05965 0.20 +0.4
1,394,088 + CA264_05965 0.26 +1.0
1,394,141 - CA264_05965 0.32 -1.9
1,394,183 + CA264_05965 0.36 -0.2
1,394,184 - CA264_05965 0.36 -0.6
1,394,184 - CA264_05965 0.36 -0.2
1,394,185 + CA264_05965 0.36 +0.9
1,394,185 + CA264_05965 0.36 +0.1
1,394,186 - CA264_05965 0.36 +0.2
1,394,188 + CA264_05965 0.36 -0.8
1,394,188 + CA264_05965 0.36 -1.5
1,394,189 - CA264_05965 0.36 +0.1
1,394,189 - CA264_05965 0.36 +1.2
1,394,236 + CA264_05965 0.41 +0.2
1,394,246 - CA264_05965 0.42 -0.4
1,394,246 - CA264_05965 0.42 +0.2
1,394,266 + CA264_05965 0.44 +0.7
1,394,272 + CA264_05965 0.44 -0.9
1,394,272 + CA264_05965 0.44 -0.2
1,394,272 + CA264_05965 0.44 +0.7
1,394,273 - CA264_05965 0.44 +0.3
1,394,273 - CA264_05965 0.44 -0.6
1,394,273 - CA264_05965 0.44 +1.0
1,394,327 - CA264_05965 0.49 -0.2
1,394,337 - CA264_05965 0.50 +0.3
1,394,433 + CA264_05965 0.60 -0.8
1,394,462 + CA264_05965 0.62 -1.2
1,394,463 - CA264_05965 0.62 +0.4
1,394,474 - CA264_05965 0.63 -0.3
1,394,533 - CA264_05965 0.69 -1.0
1,394,560 + CA264_05965 0.72 +0.4
1,394,630 - CA264_05965 0.78 -0.5
1,394,669 + CA264_05965 0.82 -0.1
1,394,670 - CA264_05965 0.82 +0.4
1,394,689 + CA264_05965 0.84 +0.2
1,394,690 - CA264_05965 0.84 -0.3
1,394,697 + CA264_05965 0.85 +1.0
1,394,701 + CA264_05965 0.85 -1.2
1,394,727 - CA264_05965 0.88 +0.8
1,394,820 + +0.7
1,394,821 - -0.1
1,394,830 + -0.4
1,394,831 - +0.5
1,394,833 - +0.4
1,394,852 - +0.3
1,394,852 - -1.4
1,394,852 - +0.8
1,394,858 + +1.2
1,394,859 - -0.1
1,394,862 + +0.8
1,394,893 + +0.2
1,394,932 + +0.2
1,394,944 + +0.1
1,394,950 + -0.1
1,394,968 - -0.7
1,394,970 - CA264_05970 0.10 -2.3
1,394,970 - CA264_05970 0.10 -1.9
1,395,083 - CA264_05970 0.39 -3.3
1,395,090 + CA264_05970 0.41 +0.2
1,395,090 + CA264_05970 0.41 -0.2
1,395,090 + CA264_05970 0.41 +0.0
1,395,090 + CA264_05970 0.41 -0.3
1,395,090 + CA264_05970 0.41 -1.8
1,395,091 - CA264_05970 0.41 +0.4
1,395,091 - CA264_05970 0.41 -0.6
1,395,091 - CA264_05970 0.41 -1.5
1,395,094 + CA264_05970 0.42 +0.0
1,395,199 + CA264_05970 0.69 +0.0
1,395,200 - CA264_05970 0.70 -0.4
1,395,206 - CA264_05970 0.71 +1.4
1,395,206 - CA264_05970 0.71 -0.1
1,395,250 - CA264_05970 0.82 -1.4
1,395,304 - +0.1
1,395,311 + -0.5
1,395,312 - +0.3
1,395,429 + +0.2
1,395,477 + -1.7
1,395,495 - +0.5
1,395,505 + -1.6
1,395,532 - -0.3
1,395,532 - -0.1
1,395,535 - -0.6
1,395,535 - +0.1
1,395,535 - +0.7
1,395,535 - +0.6
1,395,537 + -0.3
1,395,538 - -0.9
1,395,538 - -1.9
1,395,538 - +0.2
1,395,538 - +1.2
1,395,538 - -0.2
1,395,547 + -0.2
1,395,558 - +0.4
1,395,572 + -0.6
1,395,575 + -0.4
1,395,575 + +0.9
1,395,633 + CA264_05975 0.11 -0.9
1,395,633 + CA264_05975 0.11 -0.1
1,395,717 + CA264_05975 0.32 -0.4
1,395,717 + CA264_05975 0.32 -0.2
1,395,718 - CA264_05975 0.32 +0.1
1,395,718 - CA264_05975 0.32 -0.6
1,395,721 + CA264_05975 0.33 +0.1
1,395,721 + CA264_05975 0.33 -0.1
1,395,721 + CA264_05975 0.33 +1.0
1,395,721 + CA264_05975 0.33 +0.2
1,395,721 + CA264_05975 0.33 -0.3
1,395,721 + CA264_05975 0.33 +0.3
1,395,721 + CA264_05975 0.33 -0.3
1,395,721 + CA264_05975 0.33 +0.0
1,395,722 - CA264_05975 0.33 +0.6
1,395,722 - CA264_05975 0.33 +0.8
1,395,737 + CA264_05975 0.36 +0.9
1,395,737 + CA264_05975 0.36 -1.3
1,395,791 + CA264_05975 0.50 -0.3
1,395,878 + CA264_05975 0.71 -0.6
1,395,891 + CA264_05975 0.74 +0.6
1,395,984 + -1.5
1,395,994 - -0.2
1,395,997 + +0.1
1,395,998 - -0.9
1,395,998 - -1.1
1,396,044 - -0.9
1,396,135 + +0.4
1,396,186 - +0.1
1,396,202 + -0.5
1,396,202 + -0.0
1,396,203 - -0.3
1,396,203 - +0.8
1,396,203 - +0.4
1,396,310 + +1.2

Or see this region's nucleotide sequence