Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04020

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04015 and CA264_04020 are separated by 273 nucleotidesCA264_04020 and CA264_04025 are separated by 316 nucleotides CA264_04015: CA264_04015 - MBL fold metallo-hydrolase, at 930,026 to 931,375 _04015 CA264_04020: CA264_04020 - hypothetical protein, at 931,649 to 932,614 _04020 CA264_04025: CA264_04025 - hypothetical protein, at 932,931 to 933,611 _04025 Position (kb) 931 932 933Strain fitness (log2 ratio) -2 -1 0 1 2at 930.744 kb on + strand, within CA264_04015at 930.767 kb on - strand, within CA264_04015at 930.882 kb on + strand, within CA264_04015at 930.964 kb on + strand, within CA264_04015at 930.965 kb on - strand, within CA264_04015at 931.006 kb on + strand, within CA264_04015at 931.007 kb on - strand, within CA264_04015at 931.138 kb on + strand, within CA264_04015at 931.172 kb on + strand, within CA264_04015at 931.229 kb on - strand, within CA264_04015at 931.231 kb on + strand, within CA264_04015at 931.261 kb on - strandat 931.264 kb on - strandat 931.367 kb on + strandat 931.368 kb on - strandat 931.368 kb on - strandat 931.368 kb on - strandat 931.399 kb on - strandat 931.408 kb on + strandat 931.420 kb on - strandat 931.431 kb on + strandat 931.433 kb on + strandat 931.453 kb on + strandat 931.453 kb on + strandat 931.454 kb on - strandat 931.501 kb on + strandat 931.535 kb on - strandat 931.588 kb on - strandat 931.588 kb on - strandat 931.721 kb on - strandat 931.721 kb on - strandat 931.874 kb on + strand, within CA264_04020at 931.875 kb on - strand, within CA264_04020at 931.875 kb on - strand, within CA264_04020at 931.905 kb on - strand, within CA264_04020at 931.966 kb on + strand, within CA264_04020at 932.201 kb on + strand, within CA264_04020at 932.202 kb on - strand, within CA264_04020at 932.242 kb on + strand, within CA264_04020at 932.246 kb on + strand, within CA264_04020at 932.247 kb on - strand, within CA264_04020at 932.247 kb on - strand, within CA264_04020at 932.260 kb on - strand, within CA264_04020at 932.296 kb on - strand, within CA264_04020at 932.296 kb on - strand, within CA264_04020at 932.510 kb on - strand, within CA264_04020at 932.578 kb on + strandat 932.578 kb on + strandat 932.590 kb on - strandat 932.623 kb on - strandat 932.699 kb on + strandat 932.770 kb on + strandat 932.855 kb on + strandat 932.855 kb on + strandat 932.857 kb on + strandat 932.858 kb on - strandat 932.877 kb on - strandat 932.894 kb on + strandat 932.894 kb on + strandat 932.894 kb on + strandat 932.894 kb on + strandat 932.894 kb on + strandat 932.894 kb on + strandat 932.895 kb on - strandat 932.895 kb on - strandat 932.895 kb on - strandat 932.896 kb on + strandat 932.896 kb on + strandat 932.896 kb on + strandat 932.897 kb on - strandat 932.897 kb on - strandat 932.917 kb on + strandat 932.930 kb on + strandat 932.931 kb on - strandat 933.114 kb on + strand, within CA264_04025at 933.151 kb on + strand, within CA264_04025at 933.152 kb on - strand, within CA264_04025at 933.152 kb on - strand, within CA264_04025at 933.173 kb on + strand, within CA264_04025at 933.276 kb on + strand, within CA264_04025at 933.300 kb on + strand, within CA264_04025at 933.300 kb on + strand, within CA264_04025at 933.300 kb on + strand, within CA264_04025at 933.301 kb on - strand, within CA264_04025at 933.301 kb on - strand, within CA264_04025at 933.301 kb on - strand, within CA264_04025at 933.303 kb on + strand, within CA264_04025at 933.303 kb on + strand, within CA264_04025at 933.303 kb on + strand, within CA264_04025at 933.303 kb on + strand, within CA264_04025at 933.304 kb on - strand, within CA264_04025at 933.348 kb on + strand, within CA264_04025at 933.367 kb on + strand, within CA264_04025at 933.367 kb on + strand, within CA264_04025at 933.368 kb on - strand, within CA264_04025at 933.411 kb on + strand, within CA264_04025at 933.412 kb on - strand, within CA264_04025at 933.412 kb on - strand, within CA264_04025at 933.461 kb on + strand, within CA264_04025at 933.583 kb on + strandat 933.583 kb on + strandat 933.583 kb on + strandat 933.584 kb on - strandat 933.592 kb on - strandat 933.609 kb on + strandat 933.610 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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930,744 + CA264_04015 0.53 +0.7
930,767 - CA264_04015 0.55 -0.2
930,882 + CA264_04015 0.63 +0.5
930,964 + CA264_04015 0.69 +0.2
930,965 - CA264_04015 0.70 +0.0
931,006 + CA264_04015 0.73 +0.8
931,007 - CA264_04015 0.73 +0.1
931,138 + CA264_04015 0.82 -0.2
931,172 + CA264_04015 0.85 +0.3
931,229 - CA264_04015 0.89 -0.2
931,231 + CA264_04015 0.89 +1.4
931,261 - -1.0
931,264 - +0.1
931,367 + -0.2
931,368 - +1.3
931,368 - -0.4
931,368 - +0.9
931,399 - +0.2
931,408 + -1.1
931,420 - -1.2
931,431 + +0.2
931,433 + -0.2
931,453 + +1.3
931,453 + -0.1
931,454 - +0.9
931,501 + -1.1
931,535 - -1.0
931,588 - -0.4
931,588 - -0.5
931,721 - +0.0
931,721 - +0.7
931,874 + CA264_04020 0.23 -1.9
931,875 - CA264_04020 0.23 +1.0
931,875 - CA264_04020 0.23 -0.2
931,905 - CA264_04020 0.27 -1.6
931,966 + CA264_04020 0.33 -1.4
932,201 + CA264_04020 0.57 -1.9
932,202 - CA264_04020 0.57 -0.3
932,242 + CA264_04020 0.61 -0.6
932,246 + CA264_04020 0.62 +0.7
932,247 - CA264_04020 0.62 +2.1
932,247 - CA264_04020 0.62 -0.3
932,260 - CA264_04020 0.63 +0.7
932,296 - CA264_04020 0.67 -0.6
932,296 - CA264_04020 0.67 -0.6
932,510 - CA264_04020 0.89 -0.3
932,578 + +0.1
932,578 + -0.5
932,590 - -0.7
932,623 - -1.0
932,699 + -1.3
932,770 + +0.1
932,855 + -0.1
932,855 + -1.2
932,857 + +2.3
932,858 - -0.1
932,877 - -1.7
932,894 + -0.8
932,894 + -1.9
932,894 + +0.2
932,894 + -0.4
932,894 + -0.2
932,894 + +0.1
932,895 - -1.1
932,895 - -0.3
932,895 - -0.8
932,896 + -1.2
932,896 + -1.0
932,896 + -0.7
932,897 - -0.0
932,897 - -1.2
932,917 + +0.0
932,930 + -0.4
932,931 - -1.1
933,114 + CA264_04025 0.27 -1.0
933,151 + CA264_04025 0.32 -1.2
933,152 - CA264_04025 0.32 -0.6
933,152 - CA264_04025 0.32 -0.8
933,173 + CA264_04025 0.36 -0.1
933,276 + CA264_04025 0.51 -0.2
933,300 + CA264_04025 0.54 +0.2
933,300 + CA264_04025 0.54 -0.4
933,300 + CA264_04025 0.54 -1.9
933,301 - CA264_04025 0.54 -0.2
933,301 - CA264_04025 0.54 -0.3
933,301 - CA264_04025 0.54 -0.8
933,303 + CA264_04025 0.55 -2.4
933,303 + CA264_04025 0.55 -0.5
933,303 + CA264_04025 0.55 -1.9
933,303 + CA264_04025 0.55 -0.6
933,304 - CA264_04025 0.55 -2.0
933,348 + CA264_04025 0.61 -0.8
933,367 + CA264_04025 0.64 -0.9
933,367 + CA264_04025 0.64 -0.4
933,368 - CA264_04025 0.64 -0.5
933,411 + CA264_04025 0.70 -1.1
933,412 - CA264_04025 0.71 -2.2
933,412 - CA264_04025 0.71 +0.2
933,461 + CA264_04025 0.78 -0.9
933,583 + -1.1
933,583 + -1.9
933,583 + -0.4
933,584 - -2.0
933,592 - +0.2
933,609 + -0.2
933,610 - -0.5

Or see this region's nucleotide sequence