Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03845

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03840 and CA264_03845 are separated by 6 nucleotidesCA264_03845 and CA264_03850 are separated by 159 nucleotidesCA264_03850 and CA264_03855 are separated by 4 nucleotides CA264_03840: CA264_03840 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 895,954 to 896,976 _03840 CA264_03845: CA264_03845 - peptidase M17, at 896,983 to 898,416 _03845 CA264_03850: CA264_03850 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase, at 898,576 to 899,358 _03850 CA264_03855: CA264_03855 - magnesium transporter, at 899,363 to 900,715 _03855 Position (kb) 896 897 898 899Strain fitness (log2 ratio) -2 -1 0 1 2at 897.012 kb on - strandat 897.012 kb on - strandat 897.022 kb on + strandat 897.023 kb on - strandat 897.074 kb on + strandat 897.075 kb on - strandat 897.075 kb on - strandat 897.111 kb on - strandat 897.178 kb on - strand, within CA264_03845at 897.211 kb on - strand, within CA264_03845at 897.241 kb on - strand, within CA264_03845at 897.282 kb on + strand, within CA264_03845at 897.282 kb on + strand, within CA264_03845at 897.384 kb on + strand, within CA264_03845at 897.384 kb on + strand, within CA264_03845at 897.387 kb on - strand, within CA264_03845at 897.418 kb on + strand, within CA264_03845at 897.418 kb on + strand, within CA264_03845at 897.419 kb on - strand, within CA264_03845at 897.448 kb on + strand, within CA264_03845at 897.561 kb on + strand, within CA264_03845at 897.561 kb on + strand, within CA264_03845at 897.658 kb on + strand, within CA264_03845at 897.658 kb on + strand, within CA264_03845at 897.674 kb on + strand, within CA264_03845at 897.701 kb on + strand, within CA264_03845at 897.701 kb on + strand, within CA264_03845at 897.702 kb on - strand, within CA264_03845at 897.702 kb on - strand, within CA264_03845at 897.811 kb on + strand, within CA264_03845at 897.817 kb on + strand, within CA264_03845at 897.818 kb on - strand, within CA264_03845at 898.003 kb on + strand, within CA264_03845at 898.004 kb on - strand, within CA264_03845at 898.004 kb on - strand, within CA264_03845at 898.005 kb on + strand, within CA264_03845at 898.006 kb on - strand, within CA264_03845at 898.006 kb on - strand, within CA264_03845at 898.006 kb on - strand, within CA264_03845at 898.058 kb on + strand, within CA264_03845at 898.058 kb on + strand, within CA264_03845at 898.059 kb on - strand, within CA264_03845at 898.059 kb on - strand, within CA264_03845at 898.070 kb on + strand, within CA264_03845at 898.088 kb on + strand, within CA264_03845at 898.090 kb on + strand, within CA264_03845at 898.113 kb on + strand, within CA264_03845at 898.135 kb on + strand, within CA264_03845at 898.231 kb on + strand, within CA264_03845at 898.232 kb on - strand, within CA264_03845at 898.236 kb on - strand, within CA264_03845at 898.236 kb on - strand, within CA264_03845at 898.285 kb on + strandat 898.297 kb on + strandat 898.298 kb on - strandat 898.357 kb on - strandat 898.384 kb on + strandat 898.384 kb on + strandat 898.397 kb on + strandat 898.398 kb on - strandat 898.402 kb on - strandat 898.402 kb on - strandat 898.443 kb on + strandat 898.445 kb on + strandat 898.446 kb on - strandat 898.446 kb on - strandat 898.448 kb on + strandat 898.448 kb on + strandat 898.448 kb on + strandat 898.449 kb on - strandat 898.449 kb on - strandat 898.449 kb on - strandat 898.449 kb on - strandat 898.449 kb on - strandat 898.452 kb on + strandat 898.452 kb on + strandat 898.453 kb on - strandat 898.453 kb on - strandat 898.453 kb on - strandat 898.454 kb on + strandat 898.455 kb on - strandat 898.457 kb on + strandat 898.458 kb on - strandat 898.462 kb on - strandat 898.462 kb on - strandat 898.487 kb on - strandat 898.507 kb on - strandat 898.507 kb on - strandat 898.517 kb on + strandat 898.540 kb on + strandat 898.563 kb on + strandat 898.586 kb on + strandat 898.587 kb on - strandat 898.635 kb on - strandat 898.723 kb on + strand, within CA264_03850at 898.824 kb on + strand, within CA264_03850at 898.825 kb on - strand, within CA264_03850at 898.900 kb on + strand, within CA264_03850at 898.901 kb on - strand, within CA264_03850at 898.908 kb on - strand, within CA264_03850at 898.968 kb on + strand, within CA264_03850at 898.968 kb on + strand, within CA264_03850at 898.969 kb on - strand, within CA264_03850at 899.024 kb on - strand, within CA264_03850at 899.068 kb on + strand, within CA264_03850at 899.070 kb on + strand, within CA264_03850at 899.071 kb on - strand, within CA264_03850at 899.356 kb on + strandat 899.357 kb on - strandat 899.370 kb on + strandat 899.388 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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897,012 - +0.1
897,012 - -0.1
897,022 + -0.2
897,023 - -1.3
897,074 + +0.7
897,075 - -0.4
897,075 - -1.3
897,111 - -0.3
897,178 - CA264_03845 0.14 -0.3
897,211 - CA264_03845 0.16 +0.1
897,241 - CA264_03845 0.18 -0.8
897,282 + CA264_03845 0.21 -0.3
897,282 + CA264_03845 0.21 +0.4
897,384 + CA264_03845 0.28 -2.4
897,384 + CA264_03845 0.28 -0.9
897,387 - CA264_03845 0.28 +0.1
897,418 + CA264_03845 0.30 -0.4
897,418 + CA264_03845 0.30 -0.2
897,419 - CA264_03845 0.30 +0.1
897,448 + CA264_03845 0.32 -0.7
897,561 + CA264_03845 0.40 +0.6
897,561 + CA264_03845 0.40 +0.2
897,658 + CA264_03845 0.47 -0.7
897,658 + CA264_03845 0.47 -1.6
897,674 + CA264_03845 0.48 -1.5
897,701 + CA264_03845 0.50 +0.0
897,701 + CA264_03845 0.50 +0.9
897,702 - CA264_03845 0.50 -0.1
897,702 - CA264_03845 0.50 -1.0
897,811 + CA264_03845 0.58 +0.9
897,817 + CA264_03845 0.58 +0.6
897,818 - CA264_03845 0.58 +0.2
898,003 + CA264_03845 0.71 -0.1
898,004 - CA264_03845 0.71 -2.1
898,004 - CA264_03845 0.71 -0.4
898,005 + CA264_03845 0.71 -0.3
898,006 - CA264_03845 0.71 -0.6
898,006 - CA264_03845 0.71 +0.0
898,006 - CA264_03845 0.71 -0.9
898,058 + CA264_03845 0.75 +2.5
898,058 + CA264_03845 0.75 -2.2
898,059 - CA264_03845 0.75 -0.9
898,059 - CA264_03845 0.75 +1.1
898,070 + CA264_03845 0.76 +0.2
898,088 + CA264_03845 0.77 -0.4
898,090 + CA264_03845 0.77 -0.5
898,113 + CA264_03845 0.79 -0.1
898,135 + CA264_03845 0.80 +0.1
898,231 + CA264_03845 0.87 -1.3
898,232 - CA264_03845 0.87 -0.9
898,236 - CA264_03845 0.87 -1.3
898,236 - CA264_03845 0.87 -0.2
898,285 + -1.1
898,297 + -0.5
898,298 - -1.0
898,357 - +0.1
898,384 + -1.5
898,384 + -0.1
898,397 + +0.6
898,398 - -0.4
898,402 - -1.4
898,402 - +0.1
898,443 + -0.4
898,445 + +0.2
898,446 - -0.9
898,446 - -0.8
898,448 + +0.3
898,448 + -2.0
898,448 + -0.3
898,449 - -0.7
898,449 - -0.8
898,449 - -0.7
898,449 - -0.3
898,449 - +1.1
898,452 + -1.2
898,452 + -0.1
898,453 - +1.8
898,453 - -0.7
898,453 - +0.4
898,454 + -0.3
898,455 - +0.7
898,457 + +0.2
898,458 - +1.0
898,462 - -0.3
898,462 - -0.4
898,487 - -0.3
898,507 - -2.0
898,507 - +0.2
898,517 + -2.1
898,540 + -0.9
898,563 + +0.9
898,586 + -0.1
898,587 - -0.7
898,635 - -0.3
898,723 + CA264_03850 0.19 +0.1
898,824 + CA264_03850 0.32 -0.8
898,825 - CA264_03850 0.32 -1.9
898,900 + CA264_03850 0.41 -0.3
898,901 - CA264_03850 0.42 -0.6
898,908 - CA264_03850 0.42 -0.3
898,968 + CA264_03850 0.50 -1.0
898,968 + CA264_03850 0.50 +1.2
898,969 - CA264_03850 0.50 -0.5
899,024 - CA264_03850 0.57 +0.8
899,068 + CA264_03850 0.63 -1.8
899,070 + CA264_03850 0.63 +0.3
899,071 - CA264_03850 0.63 -1.7
899,356 + -0.0
899,357 - -0.3
899,370 + -0.3
899,388 - -1.1

Or see this region's nucleotide sequence