Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03180

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03175 and CA264_03180 are separated by 37 nucleotidesCA264_03180 and CA264_03185 are separated by 18 nucleotides CA264_03175: CA264_03175 - acriflavin resistance protein, at 741,300 to 744,485 _03175 CA264_03180: CA264_03180 - efflux transporter periplasmic adaptor subunit, at 744,523 to 745,575 _03180 CA264_03185: CA264_03185 - hypothetical protein, at 745,594 to 746,904 _03185 Position (kb) 744 745 746Strain fitness (log2 ratio) -2 -1 0 1 2at 743.557 kb on + strand, within CA264_03175at 743.557 kb on + strand, within CA264_03175at 743.557 kb on + strand, within CA264_03175at 743.557 kb on + strand, within CA264_03175at 743.676 kb on + strand, within CA264_03175at 743.704 kb on - strand, within CA264_03175at 743.704 kb on - strand, within CA264_03175at 743.788 kb on + strand, within CA264_03175at 743.788 kb on + strand, within CA264_03175at 743.793 kb on - strand, within CA264_03175at 743.793 kb on - strand, within CA264_03175at 743.832 kb on + strand, within CA264_03175at 743.832 kb on + strand, within CA264_03175at 743.838 kb on - strand, within CA264_03175at 743.869 kb on - strand, within CA264_03175at 743.902 kb on + strand, within CA264_03175at 744.006 kb on + strand, within CA264_03175at 744.080 kb on + strand, within CA264_03175at 744.083 kb on - strand, within CA264_03175at 744.098 kb on + strand, within CA264_03175at 744.142 kb on - strand, within CA264_03175at 744.142 kb on - strand, within CA264_03175at 744.142 kb on - strand, within CA264_03175at 744.155 kb on + strand, within CA264_03175at 744.156 kb on - strand, within CA264_03175at 744.352 kb on - strandat 744.385 kb on + strandat 744.385 kb on + strandat 744.386 kb on - strandat 744.386 kb on - strandat 744.422 kb on + strandat 744.423 kb on - strandat 744.427 kb on - strandat 744.445 kb on - strandat 744.488 kb on - strandat 744.503 kb on - strandat 744.516 kb on + strandat 744.517 kb on - strandat 744.683 kb on - strand, within CA264_03180at 744.773 kb on + strand, within CA264_03180at 744.774 kb on - strand, within CA264_03180at 745.026 kb on - strand, within CA264_03180at 745.264 kb on + strand, within CA264_03180at 745.264 kb on + strand, within CA264_03180at 745.303 kb on + strand, within CA264_03180at 745.382 kb on - strand, within CA264_03180at 745.383 kb on + strand, within CA264_03180at 745.383 kb on + strand, within CA264_03180at 745.384 kb on - strand, within CA264_03180at 745.389 kb on + strand, within CA264_03180at 745.389 kb on + strand, within CA264_03180at 745.402 kb on - strand, within CA264_03180at 745.428 kb on + strand, within CA264_03180at 745.428 kb on + strand, within CA264_03180at 745.519 kb on - strandat 745.520 kb on + strandat 745.527 kb on + strandat 745.559 kb on + strandat 745.560 kb on - strandat 745.595 kb on + strandat 745.596 kb on - strandat 745.600 kb on - strandat 745.604 kb on - strandat 745.634 kb on + strandat 745.655 kb on + strandat 745.655 kb on + strandat 745.656 kb on - strandat 745.660 kb on + strandat 745.749 kb on - strand, within CA264_03185at 745.814 kb on + strand, within CA264_03185at 745.969 kb on - strand, within CA264_03185at 746.005 kb on + strand, within CA264_03185at 746.006 kb on - strand, within CA264_03185at 746.089 kb on + strand, within CA264_03185at 746.097 kb on + strand, within CA264_03185at 746.101 kb on - strand, within CA264_03185at 746.141 kb on + strand, within CA264_03185at 746.175 kb on + strand, within CA264_03185at 746.180 kb on - strand, within CA264_03185at 746.193 kb on + strand, within CA264_03185at 746.262 kb on + strand, within CA264_03185at 746.262 kb on + strand, within CA264_03185at 746.263 kb on - strand, within CA264_03185at 746.285 kb on + strand, within CA264_03185at 746.285 kb on + strand, within CA264_03185at 746.286 kb on - strand, within CA264_03185at 746.286 kb on - strand, within CA264_03185at 746.295 kb on + strand, within CA264_03185at 746.295 kb on + strand, within CA264_03185at 746.295 kb on + strand, within CA264_03185at 746.305 kb on + strand, within CA264_03185at 746.347 kb on - strand, within CA264_03185at 746.468 kb on + strand, within CA264_03185at 746.471 kb on + strand, within CA264_03185at 746.490 kb on - strand, within CA264_03185

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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743,557 + CA264_03175 0.71 -0.3
743,557 + CA264_03175 0.71 +0.1
743,557 + CA264_03175 0.71 -1.8
743,557 + CA264_03175 0.71 -0.3
743,676 + CA264_03175 0.75 -2.2
743,704 - CA264_03175 0.75 -2.7
743,704 - CA264_03175 0.75 -2.4
743,788 + CA264_03175 0.78 -0.7
743,788 + CA264_03175 0.78 -1.8
743,793 - CA264_03175 0.78 -1.0
743,793 - CA264_03175 0.78 -1.1
743,832 + CA264_03175 0.79 +1.5
743,832 + CA264_03175 0.79 -0.0
743,838 - CA264_03175 0.80 -1.1
743,869 - CA264_03175 0.81 -0.2
743,902 + CA264_03175 0.82 -1.0
744,006 + CA264_03175 0.85 +0.6
744,080 + CA264_03175 0.87 -0.4
744,083 - CA264_03175 0.87 -1.8
744,098 + CA264_03175 0.88 +0.3
744,142 - CA264_03175 0.89 -0.3
744,142 - CA264_03175 0.89 -1.2
744,142 - CA264_03175 0.89 -0.8
744,155 + CA264_03175 0.90 +0.3
744,156 - CA264_03175 0.90 -1.8
744,352 - -1.3
744,385 + -0.1
744,385 + +0.1
744,386 - -0.9
744,386 - -2.0
744,422 + +0.2
744,423 - -1.0
744,427 - -1.0
744,445 - -0.3
744,488 - -1.7
744,503 - -0.9
744,516 + -0.6
744,517 - -0.8
744,683 - CA264_03180 0.15 -2.0
744,773 + CA264_03180 0.24 -0.8
744,774 - CA264_03180 0.24 -0.8
745,026 - CA264_03180 0.48 +1.3
745,264 + CA264_03180 0.70 -1.4
745,264 + CA264_03180 0.70 -0.3
745,303 + CA264_03180 0.74 -0.4
745,382 - CA264_03180 0.82 +2.5
745,383 + CA264_03180 0.82 -1.6
745,383 + CA264_03180 0.82 -2.2
745,384 - CA264_03180 0.82 -2.6
745,389 + CA264_03180 0.82 -0.2
745,389 + CA264_03180 0.82 -0.2
745,402 - CA264_03180 0.83 -0.6
745,428 + CA264_03180 0.86 -1.0
745,428 + CA264_03180 0.86 +0.4
745,519 - -1.8
745,520 + -1.6
745,527 + -2.2
745,559 + +0.3
745,560 - +0.8
745,595 + -1.8
745,596 - -2.7
745,600 - -1.0
745,604 - -1.7
745,634 + -1.8
745,655 + -0.5
745,655 + +0.6
745,656 - -0.4
745,660 + -0.2
745,749 - CA264_03185 0.12 -0.4
745,814 + CA264_03185 0.17 -0.6
745,969 - CA264_03185 0.29 -2.0
746,005 + CA264_03185 0.31 +0.1
746,006 - CA264_03185 0.31 -2.7
746,089 + CA264_03185 0.38 -1.0
746,097 + CA264_03185 0.38 -0.5
746,101 - CA264_03185 0.39 -1.2
746,141 + CA264_03185 0.42 +0.1
746,175 + CA264_03185 0.44 -0.6
746,180 - CA264_03185 0.45 -1.3
746,193 + CA264_03185 0.46 +0.0
746,262 + CA264_03185 0.51 -2.5
746,262 + CA264_03185 0.51 -1.9
746,263 - CA264_03185 0.51 +0.2
746,285 + CA264_03185 0.53 -2.6
746,285 + CA264_03185 0.53 -1.2
746,286 - CA264_03185 0.53 -2.4
746,286 - CA264_03185 0.53 -1.0
746,295 + CA264_03185 0.53 -1.3
746,295 + CA264_03185 0.53 -0.1
746,295 + CA264_03185 0.53 +1.5
746,305 + CA264_03185 0.54 -1.2
746,347 - CA264_03185 0.57 -1.3
746,468 + CA264_03185 0.67 -0.3
746,471 + CA264_03185 0.67 -0.9
746,490 - CA264_03185 0.68 -0.6

Or see this region's nucleotide sequence