Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02495

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_02490 and CA264_02495 are separated by 112 nucleotidesCA264_02495 and CA264_02500 are separated by 647 nucleotidesCA264_02500 and CA264_02505 are separated by 50 nucleotides CA264_02490: CA264_02490 - hydrolase TatD, at 578,871 to 579,812 _02490 CA264_02495: CA264_02495 - hypothetical protein, at 579,925 to 580,821 _02495 CA264_02500: CA264_02500 - hypothetical protein, at 581,469 to 581,738 _02500 CA264_02505: CA264_02505 - hypothetical protein, at 581,789 to 582,454 _02505 Position (kb) 579 580 581Strain fitness (log2 ratio) -2 -1 0 1 2 3at 578.979 kb on + strand, within CA264_02490at 579.075 kb on + strand, within CA264_02490at 579.160 kb on - strand, within CA264_02490at 579.167 kb on + strand, within CA264_02490at 579.221 kb on + strand, within CA264_02490at 579.233 kb on - strand, within CA264_02490at 579.293 kb on + strand, within CA264_02490at 579.409 kb on - strand, within CA264_02490at 579.442 kb on + strand, within CA264_02490at 579.487 kb on - strand, within CA264_02490at 579.534 kb on + strand, within CA264_02490at 579.561 kb on - strand, within CA264_02490at 579.561 kb on - strand, within CA264_02490at 579.576 kb on - strand, within CA264_02490at 579.593 kb on - strand, within CA264_02490at 579.653 kb on - strand, within CA264_02490at 579.709 kb on - strand, within CA264_02490at 579.806 kb on + strandat 579.843 kb on - strandat 579.843 kb on - strandat 579.847 kb on + strandat 579.847 kb on + strandat 580.107 kb on + strand, within CA264_02495at 580.115 kb on - strand, within CA264_02495at 580.115 kb on - strand, within CA264_02495at 580.130 kb on - strand, within CA264_02495at 580.132 kb on - strand, within CA264_02495at 580.200 kb on - strand, within CA264_02495at 580.250 kb on + strand, within CA264_02495at 580.250 kb on + strand, within CA264_02495at 580.251 kb on - strand, within CA264_02495at 580.322 kb on + strand, within CA264_02495at 580.322 kb on + strand, within CA264_02495at 580.446 kb on - strand, within CA264_02495at 580.497 kb on + strand, within CA264_02495at 580.524 kb on - strand, within CA264_02495at 580.524 kb on - strand, within CA264_02495at 580.524 kb on - strand, within CA264_02495at 580.616 kb on - strand, within CA264_02495at 580.682 kb on + strand, within CA264_02495at 580.803 kb on - strandat 580.803 kb on - strandat 580.803 kb on - strandat 580.803 kb on - strandat 580.818 kb on - strandat 580.927 kb on + strandat 580.942 kb on + strandat 580.942 kb on + strandat 580.942 kb on + strandat 580.942 kb on + strandat 580.943 kb on - strandat 580.943 kb on - strandat 580.943 kb on - strandat 580.943 kb on - strandat 580.943 kb on - strandat 580.943 kb on - strandat 580.945 kb on - strandat 580.945 kb on - strandat 580.946 kb on + strandat 580.947 kb on - strandat 580.959 kb on - strandat 580.961 kb on + strandat 580.964 kb on + strandat 580.965 kb on - strandat 581.081 kb on - strandat 581.081 kb on - strandat 581.093 kb on + strandat 581.100 kb on - strandat 581.100 kb on - strandat 581.101 kb on + strandat 581.102 kb on - strandat 581.104 kb on + strandat 581.178 kb on - strandat 581.178 kb on - strandat 581.191 kb on + strandat 581.191 kb on + strandat 581.191 kb on + strandat 581.197 kb on + strandat 581.198 kb on - strandat 581.201 kb on - strandat 581.250 kb on - strandat 581.258 kb on - strandat 581.281 kb on - strandat 581.283 kb on - strandat 581.283 kb on - strandat 581.290 kb on + strandat 581.308 kb on + strandat 581.308 kb on + strandat 581.309 kb on - strandat 581.309 kb on - strandat 581.317 kb on + strandat 581.319 kb on + strandat 581.325 kb on + strandat 581.326 kb on - strandat 581.326 kb on - strandat 581.334 kb on - strandat 581.444 kb on + strandat 581.444 kb on + strandat 581.444 kb on + strandat 581.444 kb on + strandat 581.606 kb on - strand, within CA264_02500at 581.657 kb on + strand, within CA264_02500at 581.657 kb on + strand, within CA264_02500at 581.657 kb on + strand, within CA264_02500at 581.682 kb on + strand, within CA264_02500at 581.683 kb on - strand, within CA264_02500at 581.722 kb on - strandat 581.732 kb on - strandat 581.790 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
578,979 + CA264_02490 0.11 -0.4
579,075 + CA264_02490 0.22 -0.6
579,160 - CA264_02490 0.31 -0.4
579,167 + CA264_02490 0.31 -0.8
579,221 + CA264_02490 0.37 -0.1
579,233 - CA264_02490 0.38 +0.0
579,293 + CA264_02490 0.45 -0.8
579,409 - CA264_02490 0.57 +0.4
579,442 + CA264_02490 0.61 +1.6
579,487 - CA264_02490 0.65 +0.8
579,534 + CA264_02490 0.70 -1.1
579,561 - CA264_02490 0.73 +1.3
579,561 - CA264_02490 0.73 +3.0
579,576 - CA264_02490 0.75 -0.1
579,593 - CA264_02490 0.77 -0.3
579,653 - CA264_02490 0.83 +0.0
579,709 - CA264_02490 0.89 -0.1
579,806 + +0.0
579,843 - -0.4
579,843 - -0.7
579,847 + +0.5
579,847 + +0.4
580,107 + CA264_02495 0.20 -0.4
580,115 - CA264_02495 0.21 -0.0
580,115 - CA264_02495 0.21 -0.3
580,130 - CA264_02495 0.23 -0.6
580,132 - CA264_02495 0.23 +1.1
580,200 - CA264_02495 0.31 -0.3
580,250 + CA264_02495 0.36 -0.6
580,250 + CA264_02495 0.36 -1.1
580,251 - CA264_02495 0.36 -0.6
580,322 + CA264_02495 0.44 -1.0
580,322 + CA264_02495 0.44 -0.6
580,446 - CA264_02495 0.58 +0.2
580,497 + CA264_02495 0.64 +0.1
580,524 - CA264_02495 0.67 -0.1
580,524 - CA264_02495 0.67 -1.7
580,524 - CA264_02495 0.67 -1.2
580,616 - CA264_02495 0.77 -0.1
580,682 + CA264_02495 0.84 +0.5
580,803 - -0.1
580,803 - -0.4
580,803 - +0.5
580,803 - -0.0
580,818 - -0.8
580,927 + +0.0
580,942 + +0.4
580,942 + -1.0
580,942 + -0.3
580,942 + +1.4
580,943 - +0.9
580,943 - -0.6
580,943 - -1.2
580,943 - -1.2
580,943 - -2.1
580,943 - -0.2
580,945 - -0.9
580,945 - -0.5
580,946 + -1.1
580,947 - -0.5
580,959 - -1.1
580,961 + -0.3
580,964 + -0.2
580,965 - +0.6
581,081 - +0.2
581,081 - +0.6
581,093 + -0.4
581,100 - +0.2
581,100 - +0.9
581,101 + -0.8
581,102 - +0.2
581,104 + -0.1
581,178 - +0.4
581,178 - -0.4
581,191 + +0.0
581,191 + -0.3
581,191 + -0.6
581,197 + +0.4
581,198 - +0.8
581,201 - +0.8
581,250 - +0.6
581,258 - -0.5
581,281 - +1.6
581,283 - -0.6
581,283 - +0.3
581,290 + -0.0
581,308 + -0.0
581,308 + +0.9
581,309 - -1.7
581,309 - -0.9
581,317 + +0.0
581,319 + +0.8
581,325 + +0.8
581,326 - -0.9
581,326 - -0.4
581,334 - -0.3
581,444 + +0.8
581,444 + -0.4
581,444 + +0.4
581,444 + +0.4
581,606 - CA264_02500 0.51 -0.5
581,657 + CA264_02500 0.70 +0.9
581,657 + CA264_02500 0.70 +0.1
581,657 + CA264_02500 0.70 -0.2
581,682 + CA264_02500 0.79 -1.2
581,683 - CA264_02500 0.79 -0.9
581,722 - +0.4
581,732 - +0.2
581,790 + +0.7

Or see this region's nucleotide sequence