Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00815

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00805 and CA264_00810 are separated by 83 nucleotidesCA264_00810 and CA264_00815 are separated by 76 nucleotidesCA264_00815 and CA264_00820 are separated by 129 nucleotides CA264_00805: CA264_00805 - hypothetical protein, at 172,768 to 173,070 _00805 CA264_00810: CA264_00810 - phospholipase, at 173,154 to 173,813 _00810 CA264_00815: CA264_00815 - cytidine deaminase, at 173,890 to 174,372 _00815 CA264_00820: CA264_00820 - saccharopine dehydrogenase, at 174,502 to 175,851 _00820 Position (kb) 173 174 175Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 172.892 kb on - strand, within CA264_00805at 172.898 kb on - strand, within CA264_00805at 172.903 kb on + strand, within CA264_00805at 172.904 kb on - strand, within CA264_00805at 172.904 kb on - strand, within CA264_00805at 172.904 kb on - strand, within CA264_00805at 172.905 kb on + strand, within CA264_00805at 172.906 kb on - strand, within CA264_00805at 172.906 kb on - strand, within CA264_00805at 172.910 kb on - strand, within CA264_00805at 172.910 kb on - strand, within CA264_00805at 172.935 kb on - strand, within CA264_00805at 172.937 kb on - strand, within CA264_00805at 172.968 kb on + strand, within CA264_00805at 172.968 kb on + strand, within CA264_00805at 172.970 kb on + strand, within CA264_00805at 172.971 kb on - strand, within CA264_00805at 172.971 kb on - strand, within CA264_00805at 172.971 kb on - strand, within CA264_00805at 172.995 kb on + strand, within CA264_00805at 172.996 kb on - strand, within CA264_00805at 172.999 kb on - strand, within CA264_00805at 173.012 kb on - strand, within CA264_00805at 173.012 kb on - strand, within CA264_00805at 173.014 kb on - strand, within CA264_00805at 173.017 kb on - strand, within CA264_00805at 173.019 kb on + strand, within CA264_00805at 173.019 kb on + strand, within CA264_00805at 173.019 kb on + strand, within CA264_00805at 173.045 kb on + strandat 173.056 kb on - strandat 173.056 kb on - strandat 173.075 kb on + strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.078 kb on + strandat 173.080 kb on + strandat 173.080 kb on + strandat 173.085 kb on + strandat 173.085 kb on + strandat 173.085 kb on + strandat 173.086 kb on - strandat 173.091 kb on + strandat 173.091 kb on + strandat 173.096 kb on + strandat 173.096 kb on + strandat 173.096 kb on + strandat 173.100 kb on + strandat 173.100 kb on + strandat 173.100 kb on + strandat 173.101 kb on - strandat 173.128 kb on + strandat 173.128 kb on + strandat 173.148 kb on - strandat 173.155 kb on + strandat 173.155 kb on + strandat 173.160 kb on + strandat 173.161 kb on - strandat 173.161 kb on - strandat 173.182 kb on - strandat 173.242 kb on - strand, within CA264_00810at 173.242 kb on - strand, within CA264_00810at 173.315 kb on - strand, within CA264_00810at 173.360 kb on + strand, within CA264_00810at 173.360 kb on + strand, within CA264_00810at 173.361 kb on - strand, within CA264_00810at 173.361 kb on - strand, within CA264_00810at 173.483 kb on + strand, within CA264_00810at 173.483 kb on + strand, within CA264_00810at 173.523 kb on + strand, within CA264_00810at 173.695 kb on + strand, within CA264_00810at 173.770 kb on + strandat 173.773 kb on + strandat 173.783 kb on + strandat 173.830 kb on + strandat 173.881 kb on + strandat 173.881 kb on + strandat 173.891 kb on + strandat 173.940 kb on + strand, within CA264_00815at 174.000 kb on + strand, within CA264_00815at 174.009 kb on - strand, within CA264_00815at 174.019 kb on + strand, within CA264_00815at 174.020 kb on - strand, within CA264_00815at 174.260 kb on + strand, within CA264_00815at 174.346 kb on - strandat 174.446 kb on - strandat 174.478 kb on - strandat 174.501 kb on + strandat 174.557 kb on - strandat 174.557 kb on - strandat 174.590 kb on - strandat 174.805 kb on + strand, within CA264_00820at 174.806 kb on - strand, within CA264_00820at 174.806 kb on - strand, within CA264_00820at 174.809 kb on + strand, within CA264_00820at 174.927 kb on + strand, within CA264_00820at 174.960 kb on + strand, within CA264_00820at 175.015 kb on + strand, within CA264_00820at 175.023 kb on + strand, within CA264_00820at 175.023 kb on + strand, within CA264_00820at 175.043 kb on + strand, within CA264_00820at 175.072 kb on + strand, within CA264_00820at 175.078 kb on - strand, within CA264_00820at 175.078 kb on - strand, within CA264_00820at 175.078 kb on - strand, within CA264_00820at 175.090 kb on + strand, within CA264_00820at 175.091 kb on - strand, within CA264_00820at 175.091 kb on - strand, within CA264_00820at 175.096 kb on + strand, within CA264_00820at 175.096 kb on + strand, within CA264_00820at 175.096 kb on + strand, within CA264_00820at 175.096 kb on + strand, within CA264_00820at 175.096 kb on + strand, within CA264_00820at 175.097 kb on - strand, within CA264_00820at 175.097 kb on - strand, within CA264_00820at 175.097 kb on - strand, within CA264_00820at 175.097 kb on - strand, within CA264_00820at 175.097 kb on - strand, within CA264_00820at 175.309 kb on + strand, within CA264_00820at 175.309 kb on + strand, within CA264_00820at 175.309 kb on + strand, within CA264_00820at 175.310 kb on - strand, within CA264_00820at 175.353 kb on - strand, within CA264_00820

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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172,892 - CA264_00805 0.41 -0.0
172,898 - CA264_00805 0.43 -0.8
172,903 + CA264_00805 0.45 -1.1
172,904 - CA264_00805 0.45 -0.3
172,904 - CA264_00805 0.45 -3.1
172,904 - CA264_00805 0.45 -0.3
172,905 + CA264_00805 0.45 +1.2
172,906 - CA264_00805 0.46 -0.9
172,906 - CA264_00805 0.46 -0.1
172,910 - CA264_00805 0.47 +0.6
172,910 - CA264_00805 0.47 +0.5
172,935 - CA264_00805 0.55 -0.2
172,937 - CA264_00805 0.56 -0.2
172,968 + CA264_00805 0.66 +0.9
172,968 + CA264_00805 0.66 -1.6
172,970 + CA264_00805 0.67 +0.5
172,971 - CA264_00805 0.67 +0.1
172,971 - CA264_00805 0.67 -1.1
172,971 - CA264_00805 0.67 -0.5
172,995 + CA264_00805 0.75 -0.1
172,996 - CA264_00805 0.75 +0.0
172,999 - CA264_00805 0.76 -2.1
173,012 - CA264_00805 0.81 +0.5
173,012 - CA264_00805 0.81 +0.7
173,014 - CA264_00805 0.81 -0.3
173,017 - CA264_00805 0.82 -0.2
173,019 + CA264_00805 0.83 -0.7
173,019 + CA264_00805 0.83 -0.8
173,019 + CA264_00805 0.83 -0.1
173,045 + -0.1
173,056 - -0.4
173,056 - -0.2
173,075 + +1.2
173,076 - -0.7
173,076 - -0.1
173,078 + -0.8
173,080 + +0.6
173,080 + +0.1
173,085 + -0.0
173,085 + -3.1
173,085 + -1.1
173,086 - -0.4
173,091 + +0.0
173,091 + -0.2
173,096 + -0.3
173,096 + +0.0
173,096 + -0.9
173,100 + -0.7
173,100 + -1.3
173,100 + -0.5
173,101 - -0.3
173,128 + +0.2
173,128 + +1.0
173,148 - +0.6
173,155 + +0.1
173,155 + -0.7
173,160 + -1.4
173,161 - +0.2
173,161 - +2.0
173,182 - +1.3
173,242 - CA264_00810 0.13 +0.7
173,242 - CA264_00810 0.13 -0.5
173,315 - CA264_00810 0.24 -1.5
173,360 + CA264_00810 0.31 +0.5
173,360 + CA264_00810 0.31 +2.0
173,361 - CA264_00810 0.31 -1.6
173,361 - CA264_00810 0.31 -1.3
173,483 + CA264_00810 0.50 -0.5
173,483 + CA264_00810 0.50 +0.7
173,523 + CA264_00810 0.56 -1.0
173,695 + CA264_00810 0.82 -0.4
173,770 + -0.7
173,773 + +1.5
173,783 + -1.6
173,830 + -0.3
173,881 + +0.1
173,881 + +0.0
173,891 + -1.0
173,940 + CA264_00815 0.10 -0.5
174,000 + CA264_00815 0.23 +1.2
174,009 - CA264_00815 0.25 -0.1
174,019 + CA264_00815 0.27 -0.2
174,020 - CA264_00815 0.27 +0.3
174,260 + CA264_00815 0.77 +0.4
174,346 - +0.4
174,446 - -0.5
174,478 - -0.5
174,501 + -0.6
174,557 - +1.1
174,557 - +0.0
174,590 - +0.7
174,805 + CA264_00820 0.22 +1.0
174,806 - CA264_00820 0.23 -0.8
174,806 - CA264_00820 0.23 +0.2
174,809 + CA264_00820 0.23 +1.5
174,927 + CA264_00820 0.31 +0.7
174,960 + CA264_00820 0.34 +0.3
175,015 + CA264_00820 0.38 +0.3
175,023 + CA264_00820 0.39 +0.5
175,023 + CA264_00820 0.39 +0.1
175,043 + CA264_00820 0.40 -0.1
175,072 + CA264_00820 0.42 +0.6
175,078 - CA264_00820 0.43 +0.3
175,078 - CA264_00820 0.43 +0.1
175,078 - CA264_00820 0.43 -0.1
175,090 + CA264_00820 0.44 -1.0
175,091 - CA264_00820 0.44 +0.5
175,091 - CA264_00820 0.44 -1.0
175,096 + CA264_00820 0.44 -0.1
175,096 + CA264_00820 0.44 +1.9
175,096 + CA264_00820 0.44 -0.4
175,096 + CA264_00820 0.44 -1.0
175,096 + CA264_00820 0.44 +1.8
175,097 - CA264_00820 0.44 +0.1
175,097 - CA264_00820 0.44 +0.4
175,097 - CA264_00820 0.44 -0.7
175,097 - CA264_00820 0.44 +0.1
175,097 - CA264_00820 0.44 +0.0
175,309 + CA264_00820 0.60 +0.3
175,309 + CA264_00820 0.60 +0.1
175,309 + CA264_00820 0.60 +1.6
175,310 - CA264_00820 0.60 +1.0
175,353 - CA264_00820 0.63 -0.7

Or see this region's nucleotide sequence