Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00405

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00395 and CA264_00400 are separated by 276 nucleotidesCA264_00400 and CA264_00405 are separated by 29 nucleotidesCA264_00405 and CA264_00410 are separated by 158 nucleotides CA264_00395: CA264_00395 - SAM-dependent methyltransferase, at 87,133 to 87,759 _00395 CA264_00400: CA264_00400 - alkyl hydroperoxide reductase, at 88,036 to 88,674 _00400 CA264_00405: CA264_00405 - transcriptional repressor, at 88,704 to 89,168 _00405 CA264_00410: CA264_00410 - enoyl-CoA hydratase, at 89,327 to 90,100 _00410 Position (kb) 88 89 90Strain fitness (log2 ratio) -3 -2 -1 0 1at 87.781 kb on + strandat 87.782 kb on - strandat 87.782 kb on - strandat 87.782 kb on - strandat 87.826 kb on - strandat 87.826 kb on - strandat 87.826 kb on - strandat 87.937 kb on - strandat 87.961 kb on - strandat 88.018 kb on + strandat 88.062 kb on - strandat 88.065 kb on + strandat 88.069 kb on + strandat 88.093 kb on - strandat 88.226 kb on - strand, within CA264_00400at 88.280 kb on - strand, within CA264_00400at 88.348 kb on - strand, within CA264_00400at 88.376 kb on + strand, within CA264_00400at 88.551 kb on - strand, within CA264_00400at 88.663 kb on + strandat 88.663 kb on + strandat 88.663 kb on + strandat 88.722 kb on - strandat 88.728 kb on + strandat 88.729 kb on - strandat 89.036 kb on - strand, within CA264_00405at 89.114 kb on + strand, within CA264_00405at 89.142 kb on + strandat 89.198 kb on - strandat 89.224 kb on + strandat 89.229 kb on + strandat 89.230 kb on - strandat 89.263 kb on + strandat 89.263 kb on + strandat 89.264 kb on - strandat 89.265 kb on + strandat 89.288 kb on + strandat 89.289 kb on - strandat 89.309 kb on + strandat 89.310 kb on - strandat 89.321 kb on - strandat 89.410 kb on - strand, within CA264_00410at 89.547 kb on + strand, within CA264_00410at 89.547 kb on + strand, within CA264_00410at 89.609 kb on - strand, within CA264_00410at 89.609 kb on - strand, within CA264_00410at 89.705 kb on - strand, within CA264_00410at 89.705 kb on - strand, within CA264_00410at 89.705 kb on - strand, within CA264_00410at 89.705 kb on - strand, within CA264_00410at 89.821 kb on + strand, within CA264_00410at 89.821 kb on + strand, within CA264_00410at 89.822 kb on - strand, within CA264_00410at 90.089 kb on + strandat 90.090 kb on - strandat 90.103 kb on + strandat 90.104 kb on - strandat 90.104 kb on - strandat 90.104 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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87,781 + +0.2
87,782 - +0.0
87,782 - -0.1
87,782 - -0.9
87,826 - +0.4
87,826 - -2.1
87,826 - -0.3
87,937 - -0.3
87,961 - -0.3
88,018 + -1.1
88,062 - -0.8
88,065 + -1.1
88,069 + -0.7
88,093 - -2.3
88,226 - CA264_00400 0.30 -1.1
88,280 - CA264_00400 0.38 -1.2
88,348 - CA264_00400 0.49 -1.9
88,376 + CA264_00400 0.53 -2.6
88,551 - CA264_00400 0.81 -0.1
88,663 + -1.2
88,663 + -0.8
88,663 + -2.1
88,722 - -0.9
88,728 + -0.4
88,729 - -0.6
89,036 - CA264_00405 0.71 +0.1
89,114 + CA264_00405 0.88 +0.2
89,142 + -0.2
89,198 - +0.6
89,224 + +0.2
89,229 + -0.3
89,230 - +0.4
89,263 + -0.2
89,263 + +0.3
89,264 - -0.1
89,265 + -3.0
89,288 + -0.1
89,289 - -0.9
89,309 + +0.3
89,310 - -0.1
89,321 - -1.8
89,410 - CA264_00410 0.11 -0.4
89,547 + CA264_00410 0.28 -1.2
89,547 + CA264_00410 0.28 +0.4
89,609 - CA264_00410 0.36 -0.0
89,609 - CA264_00410 0.36 +1.1
89,705 - CA264_00410 0.49 -0.3
89,705 - CA264_00410 0.49 -0.6
89,705 - CA264_00410 0.49 +0.8
89,705 - CA264_00410 0.49 -0.2
89,821 + CA264_00410 0.64 -0.8
89,821 + CA264_00410 0.64 +1.2
89,822 - CA264_00410 0.64 +0.7
90,089 + -1.4
90,090 - -0.3
90,103 + -0.4
90,104 - +0.4
90,104 - -0.8
90,104 - +0.4

Or see this region's nucleotide sequence