Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28870 and ABID97_RS28875 overlap by 14 nucleotides ABID97_RS28875 and ABID97_RS28880 are separated by 80 nucleotides ABID97_RS28880 and ABID97_RS28885 are separated by 106 nucleotides
ABID97_RS28870: ABID97_RS28870 - sensor histidine kinase N-terminal domain-containing protein, at 692,507 to 693,901
_RS28870
ABID97_RS28875: ABID97_RS28875 - response regulator transcription factor, at 693,888 to 694,562
_RS28875
ABID97_RS28880: ABID97_RS28880 - tripartite tricarboxylate transporter substrate binding protein, at 694,643 to 695,623
_RS28880
ABID97_RS28885: ABID97_RS28885 - tripartite tricarboxylate transporter substrate binding protein, at 695,730 to 696,701
_RS28885
Position (kb) 694
695
696 Strain fitness (log2 ratio) -2
-1
0
1 at 693.807 kb on + strand at 693.919 kb on + strand at 693.920 kb on - strand at 694.031 kb on - strand, within ABID97_RS28875 at 694.031 kb on - strand, within ABID97_RS28875 at 694.138 kb on + strand, within ABID97_RS28875 at 694.138 kb on + strand, within ABID97_RS28875 at 694.139 kb on - strand, within ABID97_RS28875 at 694.141 kb on + strand, within ABID97_RS28875 at 694.270 kb on + strand, within ABID97_RS28875 at 694.429 kb on + strand, within ABID97_RS28875 at 694.429 kb on + strand, within ABID97_RS28875 at 694.430 kb on - strand, within ABID97_RS28875 at 694.430 kb on - strand, within ABID97_RS28875 at 694.430 kb on - strand, within ABID97_RS28875 at 694.530 kb on + strand at 694.545 kb on + strand at 694.592 kb on + strand at 694.593 kb on - strand at 694.593 kb on - strand at 694.597 kb on + strand at 694.638 kb on + strand at 694.638 kb on + strand at 694.684 kb on - strand at 694.684 kb on - strand at 694.684 kb on - strand at 694.720 kb on - strand at 694.945 kb on - strand, within ABID97_RS28880 at 694.945 kb on - strand, within ABID97_RS28880 at 695.011 kb on + strand, within ABID97_RS28880 at 695.133 kb on + strand, within ABID97_RS28880 at 695.296 kb on - strand, within ABID97_RS28880 at 695.301 kb on + strand, within ABID97_RS28880 at 695.302 kb on - strand, within ABID97_RS28880 at 695.347 kb on - strand, within ABID97_RS28880 at 695.457 kb on + strand, within ABID97_RS28880 at 695.724 kb on + strand at 695.939 kb on - strand, within ABID97_RS28885 at 695.939 kb on - strand, within ABID97_RS28885 at 695.939 kb on - strand, within ABID97_RS28885 at 695.939 kb on - strand, within ABID97_RS28885 at 695.939 kb on - strand, within ABID97_RS28885 at 696.091 kb on + strand, within ABID97_RS28885 at 696.091 kb on + strand, within ABID97_RS28885 at 696.382 kb on + strand, within ABID97_RS28885 at 696.382 kb on + strand, within ABID97_RS28885
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 693,807 + -0.1 693,919 + -0.1 693,920 - +0.1 694,031 - ABID97_RS28875 0.21 -0.5 694,031 - ABID97_RS28875 0.21 -0.2 694,138 + ABID97_RS28875 0.37 -0.9 694,138 + ABID97_RS28875 0.37 +0.6 694,139 - ABID97_RS28875 0.37 +0.4 694,141 + ABID97_RS28875 0.37 +0.1 694,270 + ABID97_RS28875 0.57 -0.1 694,429 + ABID97_RS28875 0.80 -0.3 694,429 + ABID97_RS28875 0.80 +0.0 694,430 - ABID97_RS28875 0.80 -0.1 694,430 - ABID97_RS28875 0.80 -0.2 694,430 - ABID97_RS28875 0.80 -0.3 694,530 + -0.8 694,545 + +0.2 694,592 + -0.8 694,593 - -0.2 694,593 - -0.2 694,597 + -0.7 694,638 + -0.2 694,638 + +1.3 694,684 - +0.6 694,684 - -0.9 694,684 - -0.7 694,720 - +0.0 694,945 - ABID97_RS28880 0.31 -0.3 694,945 - ABID97_RS28880 0.31 -0.9 695,011 + ABID97_RS28880 0.38 -0.5 695,133 + ABID97_RS28880 0.50 -0.3 695,296 - ABID97_RS28880 0.67 -1.5 695,301 + ABID97_RS28880 0.67 -0.2 695,302 - ABID97_RS28880 0.67 +0.3 695,347 - ABID97_RS28880 0.72 -0.1 695,457 + ABID97_RS28880 0.83 -0.0 695,724 + -1.0 695,939 - ABID97_RS28885 0.22 -0.2 695,939 - ABID97_RS28885 0.22 +0.4 695,939 - ABID97_RS28885 0.22 -2.5 695,939 - ABID97_RS28885 0.22 -0.6 695,939 - ABID97_RS28885 0.22 +0.4 696,091 + ABID97_RS28885 0.37 +1.1 696,091 + ABID97_RS28885 0.37 -1.2 696,382 + ABID97_RS28885 0.67 -1.4 696,382 + ABID97_RS28885 0.67 -0.4
Or see this region's nucleotide sequence