Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28415

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28405 and ABID97_RS28410 are separated by 117 nucleotidesABID97_RS28410 and ABID97_RS28415 are separated by 8 nucleotidesABID97_RS28415 and ABID97_RS28420 are separated by 0 nucleotidesABID97_RS28420 and ABID97_RS28425 are separated by 176 nucleotides ABID97_RS28405: ABID97_RS28405 - Bug family tripartite tricarboxylate transporter substrate binding protein, at 600,926 to 601,909 _RS28405 ABID97_RS28410: ABID97_RS28410 - enoyl-CoA hydratase/isomerase family protein, at 602,027 to 602,803 _RS28410 ABID97_RS28415: ABID97_RS28415 - CoA transferase, at 602,812 to 604,002 _RS28415 ABID97_RS28420: ABID97_RS28420 - tripartite tricarboxylate transporter substrate binding protein, at 604,003 to 604,821 _RS28420 ABID97_RS28425: ABID97_RS28425 - SDR family NAD(P)-dependent oxidoreductase, at 604,998 to 605,777 _RS28425 Position (kb) 602 603 604 605Strain fitness (log2 ratio) -1 0 1at 601.882 kb on - strandat 601.882 kb on - strandat 601.894 kb on + strandat 603.681 kb on - strand, within ABID97_RS28415at 604.102 kb on - strand, within ABID97_RS28420at 604.745 kb on + strandat 604.999 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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601,882 - -0.0
601,882 - -0.7
601,894 + -0.2
603,681 - ABID97_RS28415 0.73 -1.7
604,102 - ABID97_RS28420 0.12 -0.4
604,745 + -0.1
604,999 + -0.4

Or see this region's nucleotide sequence