Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27800

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27790 and ABID97_RS27795 are separated by 18 nucleotidesABID97_RS27795 and ABID97_RS27800 are separated by 203 nucleotidesABID97_RS27800 and ABID97_RS27805 are separated by 4 nucleotides ABID97_RS27790: ABID97_RS27790 - TolC family protein, at 478,563 to 480,038 _RS27790 ABID97_RS27795: ABID97_RS27795 - TetR/AcrR family transcriptional regulator, at 480,057 to 480,647 _RS27795 ABID97_RS27800: ABID97_RS27800 - branched-chain amino acid ABC transporter permease, at 480,851 to 481,723 _RS27800 ABID97_RS27805: ABID97_RS27805 - branched-chain amino acid ABC transporter permease, at 481,728 to 482,801 _RS27805 Position (kb) 480 481 482Strain fitness (log2 ratio) -1 0 1at 480.377 kb on - strand, within ABID97_RS27795at 481.386 kb on - strand, within ABID97_RS27800at 481.617 kb on - strand, within ABID97_RS27800at 481.680 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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480,377 - ABID97_RS27795 0.54 -0.5
481,386 - ABID97_RS27800 0.61 -1.7
481,617 - ABID97_RS27800 0.88 -0.3
481,680 - +0.2

Or see this region's nucleotide sequence