Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26580

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26575 and ABID97_RS26580 are separated by 44 nucleotidesABID97_RS26580 and ABID97_RS26585 are separated by 10 nucleotidesABID97_RS26585 and ABID97_RS26590 are separated by 46 nucleotides ABID97_RS26575: ABID97_RS26575 - acetyl-CoA C-acetyltransferase, at 237,837 to 239,021 _RS26575 ABID97_RS26580: ABID97_RS26580 - acetoacetyl-CoA reductase, at 239,066 to 239,818 _RS26580 ABID97_RS26585: ABID97_RS26585 - DUF6781 family protein, at 239,829 to 240,482 _RS26585 ABID97_RS26590: ABID97_RS26590 - cytochrome ubiquinol oxidase subunit I, at 240,529 to 241,938 _RS26590 Position (kb) 239 240Strain fitness (log2 ratio) -1 0 1at 238.342 kb on - strand, within ABID97_RS26575at 239.531 kb on + strand, within ABID97_RS26580at 239.532 kb on - strand, within ABID97_RS26580at 239.745 kb on - strandat 240.408 kb on + strand, within ABID97_RS26585

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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238,342 - ABID97_RS26575 0.43 -1.1
239,531 + ABID97_RS26580 0.62 -1.1
239,532 - ABID97_RS26580 0.62 +1.1
239,745 - -0.0
240,408 + ABID97_RS26585 0.89 -0.7

Or see this region's nucleotide sequence