Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25980

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25975 and ABID97_RS25980 are separated by 146 nucleotidesABID97_RS25980 and ABID97_RS25985 are separated by 150 nucleotides ABID97_RS25975: ABID97_RS25975 - CoA transferase, at 118,144 to 119,379 _RS25975 ABID97_RS25980: ABID97_RS25980 - LysR family transcriptional regulator, at 119,526 to 120,488 _RS25980 ABID97_RS25985: ABID97_RS25985 - CaiB/BaiF CoA-transferase family protein, at 120,639 to 121,880 _RS25985 Position (kb) 119 120 121Strain fitness (log2 ratio) -1 0 1at 118.707 kb on - strand, within ABID97_RS25975at 118.874 kb on + strand, within ABID97_RS25975at 118.953 kb on - strand, within ABID97_RS25975at 119.373 kb on - strandat 119.698 kb on + strand, within ABID97_RS25980at 119.698 kb on + strand, within ABID97_RS25980at 119.699 kb on - strand, within ABID97_RS25980at 119.876 kb on + strand, within ABID97_RS25980at 120.441 kb on + strandat 120.559 kb on + strandat 120.727 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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118,707 - ABID97_RS25975 0.46 -0.1
118,874 + ABID97_RS25975 0.59 +0.3
118,953 - ABID97_RS25975 0.65 +0.0
119,373 - -1.0
119,698 + ABID97_RS25980 0.18 +0.4
119,698 + ABID97_RS25980 0.18 -0.4
119,699 - ABID97_RS25980 0.18 -0.2
119,876 + ABID97_RS25980 0.36 +1.1
120,441 + -0.9
120,559 + +0.6
120,727 + -0.8

Or see this region's nucleotide sequence