Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25845

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25835 and ABID97_RS25840 are separated by 47 nucleotidesABID97_RS25840 and ABID97_RS25845 are separated by 4 nucleotidesABID97_RS25845 and ABID97_RS25850 are separated by 24 nucleotides ABID97_RS25835: ABID97_RS25835 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 86,875 to 87,993 _RS25835 ABID97_RS25840: ABID97_RS25840 - carbohydrate ABC transporter permease, at 88,041 to 88,931 _RS25840 ABID97_RS25845: ABID97_RS25845 - sugar ABC transporter permease, at 88,936 to 89,898 _RS25845 ABID97_RS25850: ABID97_RS25850 - extracellular solute-binding protein, at 89,923 to 91,251 _RS25850 Position (kb) 88 89 90Strain fitness (log2 ratio) -2 -1 0 1at 87.956 kb on + strandat 88.096 kb on + strandat 88.405 kb on + strand, within ABID97_RS25840at 88.405 kb on + strand, within ABID97_RS25840at 88.406 kb on - strand, within ABID97_RS25840at 88.474 kb on + strand, within ABID97_RS25840at 88.664 kb on - strand, within ABID97_RS25840at 88.664 kb on - strand, within ABID97_RS25840at 88.805 kb on - strand, within ABID97_RS25840at 88.814 kb on - strand, within ABID97_RS25840at 89.072 kb on + strand, within ABID97_RS25845at 89.078 kb on + strand, within ABID97_RS25845at 90.044 kb on + strandat 90.323 kb on + strand, within ABID97_RS25850at 90.396 kb on - strand, within ABID97_RS25850at 90.443 kb on + strand, within ABID97_RS25850at 90.446 kb on + strand, within ABID97_RS25850at 90.446 kb on + strand, within ABID97_RS25850at 90.627 kb on - strand, within ABID97_RS25850at 90.780 kb on - strand, within ABID97_RS25850at 90.782 kb on + strand, within ABID97_RS25850at 90.783 kb on - strand, within ABID97_RS25850at 90.881 kb on + strand, within ABID97_RS25850at 90.881 kb on + strand, within ABID97_RS25850at 90.881 kb on + strand, within ABID97_RS25850

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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87,956 + +0.2
88,096 + +0.1
88,405 + ABID97_RS25840 0.41 -0.4
88,405 + ABID97_RS25840 0.41 -0.9
88,406 - ABID97_RS25840 0.41 +0.5
88,474 + ABID97_RS25840 0.49 -0.1
88,664 - ABID97_RS25840 0.70 +0.7
88,664 - ABID97_RS25840 0.70 +0.6
88,805 - ABID97_RS25840 0.86 -0.3
88,814 - ABID97_RS25840 0.87 +0.1
89,072 + ABID97_RS25845 0.14 -0.4
89,078 + ABID97_RS25845 0.15 +0.7
90,044 + +0.7
90,323 + ABID97_RS25850 0.30 -1.3
90,396 - ABID97_RS25850 0.36 -0.0
90,443 + ABID97_RS25850 0.39 +0.1
90,446 + ABID97_RS25850 0.39 +0.2
90,446 + ABID97_RS25850 0.39 -0.2
90,627 - ABID97_RS25850 0.53 -0.4
90,780 - ABID97_RS25850 0.64 -1.5
90,782 + ABID97_RS25850 0.65 -1.8
90,783 - ABID97_RS25850 0.65 -0.4
90,881 + ABID97_RS25850 0.72 -0.2
90,881 + ABID97_RS25850 0.72 -0.1
90,881 + ABID97_RS25850 0.72 +0.0

Or see this region's nucleotide sequence