Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25710

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25705 and ABID97_RS25710 are separated by 227 nucleotidesABID97_RS25710 and ABID97_RS25715 overlap by 4 nucleotidesABID97_RS25715 and ABID97_RS25720 are separated by 20 nucleotides ABID97_RS25705: ABID97_RS25705 - GNAT family N-acetyltransferase, at 60,065 to 60,949 _RS25705 ABID97_RS25710: ABID97_RS25710 - aldehyde dehydrogenase family protein, at 61,177 to 62,685 _RS25710 ABID97_RS25715: ABID97_RS25715 - cupin domain-containing protein, at 62,682 to 63,401 _RS25715 ABID97_RS25720: ABID97_RS25720 - FAD-binding oxidoreductase, at 63,422 to 64,747 _RS25720 Position (kb) 61 62 63Strain fitness (log2 ratio) -1 0 1at 60.300 kb on - strand, within ABID97_RS25705at 60.577 kb on - strand, within ABID97_RS25705at 61.020 kb on - strandat 62.585 kb on - strandat 62.585 kb on - strandat 63.375 kb on + strandat 63.375 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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60,300 - ABID97_RS25705 0.27 -0.0
60,577 - ABID97_RS25705 0.58 -0.4
61,020 - +0.0
62,585 - -0.3
62,585 - -0.4
63,375 + -0.6
63,375 + -0.5

Or see this region's nucleotide sequence