Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25570 and ABID97_RS25575 are separated by 110 nucleotides ABID97_RS25575 and ABID97_RS25580 overlap by 38 nucleotides ABID97_RS25580 and ABID97_RS25585 are separated by 240 nucleotides
ABID97_RS25570: ABID97_RS25570 - alkene reductase, at 33,987 to 35,048
_RS25570
ABID97_RS25575: ABID97_RS25575 - LysR family transcriptional regulator, at 35,159 to 36,034
_RS25575
ABID97_RS25580: ABID97_RS25580 - nucleotidyltransferase family protein, at 35,997 to 36,596
_RS25580
ABID97_RS25585: ABID97_RS25585 - DUF6662 family protein, at 36,837 to 37,754
_RS25585
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.012 kb on - strand at 35.112 kb on + strand at 35.166 kb on - strand at 35.166 kb on - strand at 35.166 kb on - strand at 35.166 kb on - strand at 35.166 kb on - strand at 35.352 kb on - strand, within ABID97_RS25575 at 35.354 kb on + strand, within ABID97_RS25575 at 35.474 kb on + strand, within ABID97_RS25575 at 35.474 kb on + strand, within ABID97_RS25575 at 35.475 kb on - strand, within ABID97_RS25575 at 35.475 kb on - strand, within ABID97_RS25575 at 35.475 kb on - strand, within ABID97_RS25575 at 35.648 kb on + strand, within ABID97_RS25575 at 35.648 kb on + strand, within ABID97_RS25575 at 35.649 kb on - strand, within ABID97_RS25575 at 35.649 kb on - strand, within ABID97_RS25575 at 35.649 kb on - strand, within ABID97_RS25575 at 35.649 kb on - strand, within ABID97_RS25575 at 35.654 kb on + strand, within ABID97_RS25575 at 35.655 kb on - strand, within ABID97_RS25575 at 35.655 kb on - strand, within ABID97_RS25575 at 35.825 kb on + strand, within ABID97_RS25575 at 35.825 kb on + strand, within ABID97_RS25575 at 35.826 kb on - strand, within ABID97_RS25575 at 35.826 kb on - strand, within ABID97_RS25575 at 35.826 kb on - strand, within ABID97_RS25575 at 36.427 kb on + strand, within ABID97_RS25580 at 36.709 kb on - strand at 36.939 kb on + strand, within ABID97_RS25585 at 36.939 kb on + strand, within ABID97_RS25585 at 36.939 kb on + strand, within ABID97_RS25585 at 36.939 kb on + strand, within ABID97_RS25585 at 37.021 kb on - strand, within ABID97_RS25585 at 37.054 kb on - strand, within ABID97_RS25585 at 37.095 kb on + strand, within ABID97_RS25585 at 37.231 kb on - strand, within ABID97_RS25585 at 37.381 kb on - strand, within ABID97_RS25585 at 37.531 kb on - strand, within ABID97_RS25585 at 37.539 kb on + strand, within ABID97_RS25585 at 37.569 kb on + strand, within ABID97_RS25585
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 35,012 - -0.1 35,112 + +0.4 35,166 - -0.0 35,166 - -0.1 35,166 - +1.1 35,166 - -0.2 35,166 - +1.2 35,352 - ABID97_RS25575 0.22 -1.8 35,354 + ABID97_RS25575 0.22 -0.4 35,474 + ABID97_RS25575 0.36 -0.2 35,474 + ABID97_RS25575 0.36 +1.6 35,475 - ABID97_RS25575 0.36 +0.1 35,475 - ABID97_RS25575 0.36 +2.0 35,475 - ABID97_RS25575 0.36 +0.1 35,648 + ABID97_RS25575 0.56 -0.1 35,648 + ABID97_RS25575 0.56 -0.4 35,649 - ABID97_RS25575 0.56 +0.0 35,649 - ABID97_RS25575 0.56 -0.9 35,649 - ABID97_RS25575 0.56 +0.3 35,649 - ABID97_RS25575 0.56 +0.2 35,654 + ABID97_RS25575 0.57 -0.8 35,655 - ABID97_RS25575 0.57 -1.0 35,655 - ABID97_RS25575 0.57 -0.1 35,825 + ABID97_RS25575 0.76 -0.0 35,825 + ABID97_RS25575 0.76 +0.3 35,826 - ABID97_RS25575 0.76 -0.0 35,826 - ABID97_RS25575 0.76 -1.0 35,826 - ABID97_RS25575 0.76 -0.6 36,427 + ABID97_RS25580 0.72 -2.0 36,709 - -0.1 36,939 + ABID97_RS25585 0.11 -0.4 36,939 + ABID97_RS25585 0.11 -0.9 36,939 + ABID97_RS25585 0.11 -2.8 36,939 + ABID97_RS25585 0.11 -0.1 37,021 - ABID97_RS25585 0.20 -1.7 37,054 - ABID97_RS25585 0.24 +0.3 37,095 + ABID97_RS25585 0.28 -0.0 37,231 - ABID97_RS25585 0.43 -0.4 37,381 - ABID97_RS25585 0.59 -0.0 37,531 - ABID97_RS25585 0.76 +1.4 37,539 + ABID97_RS25585 0.76 -1.0 37,569 + ABID97_RS25585 0.80 +1.2
Or see this region's nucleotide sequence