Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25410

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25410 and ABID97_RS25415 are separated by 2 nucleotides ABID97_RS25410: ABID97_RS25410 - aldehyde dehydrogenase family protein, at 1 to 1,017 _RS25410 ABID97_RS25415: ABID97_RS25415 - GMC family oxidoreductase N-terminal domain-containing protein, at 1,020 to 2,630 _RS25415 Position (kb) 0 1 2Strain fitness (log2 ratio) -1 0 1at 0.086 kb on + strandat 0.087 kb on - strandat 1.721 kb on - strand, within ABID97_RS25415at 1.721 kb on - strand, within ABID97_RS25415at 1.721 kb on - strand, within ABID97_RS25415at 1.748 kb on - strand, within ABID97_RS25415at 1.748 kb on - strand, within ABID97_RS25415

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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86 + -0.4
87 - -0.4
1,721 - ABID97_RS25415 0.44 +0.2
1,721 - ABID97_RS25415 0.44 +0.4
1,721 - ABID97_RS25415 0.44 +0.7
1,748 - ABID97_RS25415 0.45 +0.6
1,748 - ABID97_RS25415 0.45 +0.4

Or see this region's nucleotide sequence