Strain Fitness in Variovorax sp. OAS795 around ABID97_RS24595

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS24590 and ABID97_RS24595 are separated by 11 nucleotidesABID97_RS24595 and ABID97_RS24600 are separated by 121 nucleotides ABID97_RS24590: ABID97_RS24590 - 4-hydroxybenzoate 3-monooxygenase, at 5,089,595 to 5,090,785 _RS24590 ABID97_RS24595: ABID97_RS24595 - tripartite tricarboxylate transporter substrate binding protein, at 5,090,797 to 5,091,759 _RS24595 ABID97_RS24600: ABID97_RS24600 - aldehyde dehydrogenase, at 5,091,881 to 5,093,329 _RS24600 Position (kb) 5090 5091 5092Strain fitness (log2 ratio) -2 -1 0 1at 5089.800 kb on + strand, within ABID97_RS24590at 5089.833 kb on + strand, within ABID97_RS24590at 5089.951 kb on - strand, within ABID97_RS24590at 5090.118 kb on + strand, within ABID97_RS24590at 5090.118 kb on + strand, within ABID97_RS24590at 5090.119 kb on - strand, within ABID97_RS24590at 5090.181 kb on + strand, within ABID97_RS24590at 5090.182 kb on - strand, within ABID97_RS24590at 5090.487 kb on + strand, within ABID97_RS24590at 5090.861 kb on + strandat 5090.861 kb on + strandat 5090.862 kb on - strandat 5091.134 kb on + strand, within ABID97_RS24595at 5091.134 kb on + strand, within ABID97_RS24595at 5091.444 kb on - strand, within ABID97_RS24595at 5091.537 kb on - strand, within ABID97_RS24595at 5091.882 kb on + strandat 5091.882 kb on + strandat 5092.603 kb on - strand, within ABID97_RS24600

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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5,089,800 + ABID97_RS24590 0.17 -1.0
5,089,833 + ABID97_RS24590 0.20 -0.8
5,089,951 - ABID97_RS24590 0.30 -2.7
5,090,118 + ABID97_RS24590 0.44 -0.7
5,090,118 + ABID97_RS24590 0.44 -1.5
5,090,119 - ABID97_RS24590 0.44 -1.6
5,090,181 + ABID97_RS24590 0.49 -1.6
5,090,182 - ABID97_RS24590 0.49 -0.7
5,090,487 + ABID97_RS24590 0.75 +0.5
5,090,861 + -1.0
5,090,861 + -0.8
5,090,862 - -0.6
5,091,134 + ABID97_RS24595 0.35 -1.4
5,091,134 + ABID97_RS24595 0.35 -0.5
5,091,444 - ABID97_RS24595 0.67 -1.4
5,091,537 - ABID97_RS24595 0.77 -2.1
5,091,882 + -0.7
5,091,882 + +1.2
5,092,603 - ABID97_RS24600 0.50 -1.4

Or see this region's nucleotide sequence