Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24590 and ABID97_RS24595 are separated by 11 nucleotides ABID97_RS24595 and ABID97_RS24600 are separated by 121 nucleotides
ABID97_RS24590: ABID97_RS24590 - 4-hydroxybenzoate 3-monooxygenase, at 5,089,595 to 5,090,785
_RS24590
ABID97_RS24595: ABID97_RS24595 - tripartite tricarboxylate transporter substrate binding protein, at 5,090,797 to 5,091,759
_RS24595
ABID97_RS24600: ABID97_RS24600 - aldehyde dehydrogenase, at 5,091,881 to 5,093,329
_RS24600
Position (kb)
5090
5091
5092 Strain fitness (log2 ratio)
-2
-1
0
1 at 5089.800 kb on + strand, within ABID97_RS24590 at 5089.833 kb on + strand, within ABID97_RS24590 at 5089.951 kb on - strand, within ABID97_RS24590 at 5090.118 kb on + strand, within ABID97_RS24590 at 5090.118 kb on + strand, within ABID97_RS24590 at 5090.119 kb on - strand, within ABID97_RS24590 at 5090.181 kb on + strand, within ABID97_RS24590 at 5090.182 kb on - strand, within ABID97_RS24590 at 5090.487 kb on + strand, within ABID97_RS24590 at 5090.861 kb on + strand at 5090.861 kb on + strand at 5090.862 kb on - strand at 5091.134 kb on + strand, within ABID97_RS24595 at 5091.134 kb on + strand, within ABID97_RS24595 at 5091.444 kb on - strand, within ABID97_RS24595 at 5091.537 kb on - strand, within ABID97_RS24595 at 5091.882 kb on + strand at 5091.882 kb on + strand at 5092.603 kb on - strand, within ABID97_RS24600
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 5,089,800 + ABID97_RS24590 0.17 -1.0 5,089,833 + ABID97_RS24590 0.20 -0.8 5,089,951 - ABID97_RS24590 0.30 -2.7 5,090,118 + ABID97_RS24590 0.44 -0.7 5,090,118 + ABID97_RS24590 0.44 -1.5 5,090,119 - ABID97_RS24590 0.44 -1.6 5,090,181 + ABID97_RS24590 0.49 -1.6 5,090,182 - ABID97_RS24590 0.49 -0.7 5,090,487 + ABID97_RS24590 0.75 +0.5 5,090,861 + -1.0 5,090,861 + -0.8 5,090,862 - -0.6 5,091,134 + ABID97_RS24595 0.35 -1.4 5,091,134 + ABID97_RS24595 0.35 -0.5 5,091,444 - ABID97_RS24595 0.67 -1.4 5,091,537 - ABID97_RS24595 0.77 -2.1 5,091,882 + -0.7 5,091,882 + +1.2 5,092,603 - ABID97_RS24600 0.50 -1.4
Or see this region's nucleotide sequence