Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24315 and ABID97_RS24320 overlap by 4 nucleotides ABID97_RS24320 and ABID97_RS24325 are separated by 17 nucleotides ABID97_RS24325 and ABID97_RS24330 are separated by 48 nucleotides
ABID97_RS24315: ABID97_RS24315 - TadE/TadG family type IV pilus assembly protein, at 5,027,518 to 5,028,003
_RS24315
ABID97_RS24320: ABID97_RS24320 - TadE/TadG family type IV pilus assembly protein, at 5,028,000 to 5,028,494
_RS24320
ABID97_RS24325: ABID97_RS24325 - pilus assembly protein TadG-related protein, at 5,028,512 to 5,030,587
_RS24325
ABID97_RS24330: ABID97_RS24330 - sigma 54-interacting transcriptional regulator, at 5,030,636 to 5,032,063
_RS24330
Position (kb) 5028
5029
5030
5031 Strain fitness (log2 ratio) -1
0
1
2 at 5027.566 kb on + strand at 5027.566 kb on + strand at 5027.567 kb on - strand, within ABID97_RS24315 at 5027.614 kb on + strand, within ABID97_RS24315 at 5027.614 kb on + strand, within ABID97_RS24315 at 5027.615 kb on - strand, within ABID97_RS24315 at 5027.615 kb on - strand, within ABID97_RS24315 at 5027.751 kb on - strand, within ABID97_RS24315 at 5028.105 kb on + strand, within ABID97_RS24320 at 5028.106 kb on - strand, within ABID97_RS24320 at 5028.106 kb on - strand, within ABID97_RS24320 at 5028.106 kb on - strand, within ABID97_RS24320 at 5028.135 kb on + strand, within ABID97_RS24320 at 5028.135 kb on + strand, within ABID97_RS24320 at 5028.135 kb on + strand, within ABID97_RS24320 at 5028.136 kb on - strand, within ABID97_RS24320 at 5028.136 kb on - strand, within ABID97_RS24320 at 5028.246 kb on + strand, within ABID97_RS24320 at 5028.246 kb on + strand, within ABID97_RS24320 at 5028.247 kb on - strand, within ABID97_RS24320 at 5028.493 kb on - strand at 5029.172 kb on + strand, within ABID97_RS24325 at 5029.568 kb on + strand, within ABID97_RS24325 at 5029.568 kb on + strand, within ABID97_RS24325 at 5029.568 kb on + strand, within ABID97_RS24325 at 5029.568 kb on + strand, within ABID97_RS24325 at 5029.569 kb on - strand, within ABID97_RS24325 at 5029.569 kb on - strand, within ABID97_RS24325 at 5029.569 kb on - strand, within ABID97_RS24325 at 5029.850 kb on + strand, within ABID97_RS24325 at 5029.850 kb on + strand, within ABID97_RS24325 at 5029.851 kb on - strand, within ABID97_RS24325 at 5029.851 kb on - strand, within ABID97_RS24325 at 5029.851 kb on - strand, within ABID97_RS24325 at 5030.099 kb on + strand, within ABID97_RS24325 at 5030.100 kb on - strand, within ABID97_RS24325 at 5030.100 kb on - strand, within ABID97_RS24325 at 5030.288 kb on + strand, within ABID97_RS24325 at 5030.289 kb on - strand, within ABID97_RS24325 at 5030.289 kb on - strand, within ABID97_RS24325 at 5030.363 kb on + strand, within ABID97_RS24325 at 5030.364 kb on - strand, within ABID97_RS24325 at 5030.582 kb on + strand at 5030.582 kb on + strand at 5030.583 kb on - strand at 5030.583 kb on - strand at 5030.951 kb on + strand, within ABID97_RS24330 at 5031.188 kb on + strand, within ABID97_RS24330 at 5031.188 kb on + strand, within ABID97_RS24330 at 5031.188 kb on + strand, within ABID97_RS24330 at 5031.189 kb on - strand, within ABID97_RS24330 at 5031.369 kb on - strand, within ABID97_RS24330
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 5,027,566 + -0.4 5,027,566 + -0.6 5,027,567 - ABID97_RS24315 0.10 +1.5 5,027,614 + ABID97_RS24315 0.20 +0.1 5,027,614 + ABID97_RS24315 0.20 +0.7 5,027,615 - ABID97_RS24315 0.20 -0.0 5,027,615 - ABID97_RS24315 0.20 +0.4 5,027,751 - ABID97_RS24315 0.48 -0.0 5,028,105 + ABID97_RS24320 0.21 +1.5 5,028,106 - ABID97_RS24320 0.21 +0.3 5,028,106 - ABID97_RS24320 0.21 -0.8 5,028,106 - ABID97_RS24320 0.21 +0.1 5,028,135 + ABID97_RS24320 0.27 -0.1 5,028,135 + ABID97_RS24320 0.27 -0.6 5,028,135 + ABID97_RS24320 0.27 -1.3 5,028,136 - ABID97_RS24320 0.27 +0.8 5,028,136 - ABID97_RS24320 0.27 -0.5 5,028,246 + ABID97_RS24320 0.50 +0.4 5,028,246 + ABID97_RS24320 0.50 -0.2 5,028,247 - ABID97_RS24320 0.50 +1.3 5,028,493 - -0.2 5,029,172 + ABID97_RS24325 0.32 +0.5 5,029,568 + ABID97_RS24325 0.51 -1.0 5,029,568 + ABID97_RS24325 0.51 +0.0 5,029,568 + ABID97_RS24325 0.51 -0.6 5,029,568 + ABID97_RS24325 0.51 -0.6 5,029,569 - ABID97_RS24325 0.51 +0.1 5,029,569 - ABID97_RS24325 0.51 +0.6 5,029,569 - ABID97_RS24325 0.51 +1.1 5,029,850 + ABID97_RS24325 0.64 -0.8 5,029,850 + ABID97_RS24325 0.64 +0.4 5,029,851 - ABID97_RS24325 0.64 +0.4 5,029,851 - ABID97_RS24325 0.64 +1.0 5,029,851 - ABID97_RS24325 0.64 +2.4 5,030,099 + ABID97_RS24325 0.76 +0.3 5,030,100 - ABID97_RS24325 0.76 +0.6 5,030,100 - ABID97_RS24325 0.76 -0.0 5,030,288 + ABID97_RS24325 0.86 -1.2 5,030,289 - ABID97_RS24325 0.86 +1.1 5,030,289 - ABID97_RS24325 0.86 +0.8 5,030,363 + ABID97_RS24325 0.89 -1.0 5,030,364 - ABID97_RS24325 0.89 -0.4 5,030,582 + +0.2 5,030,582 + -1.2 5,030,583 - -0.7 5,030,583 - -1.0 5,030,951 + ABID97_RS24330 0.22 +0.2 5,031,188 + ABID97_RS24330 0.39 +0.2 5,031,188 + ABID97_RS24330 0.39 -0.4 5,031,188 + ABID97_RS24330 0.39 +0.0 5,031,189 - ABID97_RS24330 0.39 -1.0 5,031,369 - ABID97_RS24330 0.51 +0.8
Or see this region's nucleotide sequence