Strain Fitness in Variovorax sp. OAS795 around ABID97_RS24025

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS24020 and ABID97_RS24025 are separated by 22 nucleotidesABID97_RS24025 and ABID97_RS24030 are separated by 30 nucleotides ABID97_RS24020: ABID97_RS24020 - feruloyl-CoA synthase, at 4,966,098 to 4,967,951 _RS24020 ABID97_RS24025: ABID97_RS24025 - SDR family NAD(P)-dependent oxidoreductase, at 4,967,974 to 4,968,738 _RS24025 ABID97_RS24030: ABID97_RS24030 - Bug family tripartite tricarboxylate transporter substrate binding protein, at 4,968,769 to 4,969,758 _RS24030 Position (kb) 4967 4968 4969Strain fitness (log2 ratio) -2 -1 0 1 2at 4967.034 kb on + strand, within ABID97_RS24020at 4967.034 kb on + strand, within ABID97_RS24020at 4967.035 kb on - strand, within ABID97_RS24020at 4967.133 kb on + strand, within ABID97_RS24020at 4967.133 kb on + strand, within ABID97_RS24020at 4967.260 kb on - strand, within ABID97_RS24020at 4967.260 kb on - strand, within ABID97_RS24020at 4967.592 kb on + strand, within ABID97_RS24020at 4967.592 kb on + strand, within ABID97_RS24020at 4967.592 kb on + strand, within ABID97_RS24020at 4967.592 kb on + strand, within ABID97_RS24020at 4967.593 kb on - strand, within ABID97_RS24020at 4967.593 kb on - strand, within ABID97_RS24020at 4967.593 kb on - strand, within ABID97_RS24020at 4967.593 kb on - strand, within ABID97_RS24020at 4967.593 kb on - strand, within ABID97_RS24020at 4967.710 kb on + strand, within ABID97_RS24020at 4968.451 kb on + strand, within ABID97_RS24025at 4968.874 kb on + strand, within ABID97_RS24030at 4968.875 kb on - strand, within ABID97_RS24030at 4969.090 kb on + strand, within ABID97_RS24030at 4969.090 kb on + strand, within ABID97_RS24030at 4969.091 kb on - strand, within ABID97_RS24030at 4969.091 kb on - strand, within ABID97_RS24030at 4969.091 kb on - strand, within ABID97_RS24030at 4969.092 kb on + strand, within ABID97_RS24030at 4969.093 kb on - strand, within ABID97_RS24030at 4969.207 kb on + strand, within ABID97_RS24030at 4969.207 kb on + strand, within ABID97_RS24030at 4969.207 kb on + strand, within ABID97_RS24030at 4969.474 kb on + strand, within ABID97_RS24030at 4969.475 kb on - strand, within ABID97_RS24030at 4969.706 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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4,967,034 + ABID97_RS24020 0.50 -0.2
4,967,034 + ABID97_RS24020 0.50 -0.3
4,967,035 - ABID97_RS24020 0.51 -1.2
4,967,133 + ABID97_RS24020 0.56 -0.3
4,967,133 + ABID97_RS24020 0.56 -0.5
4,967,260 - ABID97_RS24020 0.63 -1.3
4,967,260 - ABID97_RS24020 0.63 -0.1
4,967,592 + ABID97_RS24020 0.81 -0.3
4,967,592 + ABID97_RS24020 0.81 -0.2
4,967,592 + ABID97_RS24020 0.81 +0.9
4,967,592 + ABID97_RS24020 0.81 -1.8
4,967,593 - ABID97_RS24020 0.81 +0.1
4,967,593 - ABID97_RS24020 0.81 +0.4
4,967,593 - ABID97_RS24020 0.81 -0.2
4,967,593 - ABID97_RS24020 0.81 +0.4
4,967,593 - ABID97_RS24020 0.81 +0.4
4,967,710 + ABID97_RS24020 0.87 +0.1
4,968,451 + ABID97_RS24025 0.62 +0.5
4,968,874 + ABID97_RS24030 0.11 +2.4
4,968,875 - ABID97_RS24030 0.11 -1.2
4,969,090 + ABID97_RS24030 0.32 -1.3
4,969,090 + ABID97_RS24030 0.32 -0.3
4,969,091 - ABID97_RS24030 0.33 +0.9
4,969,091 - ABID97_RS24030 0.33 -0.8
4,969,091 - ABID97_RS24030 0.33 +0.5
4,969,092 + ABID97_RS24030 0.33 -0.6
4,969,093 - ABID97_RS24030 0.33 +0.4
4,969,207 + ABID97_RS24030 0.44 -0.6
4,969,207 + ABID97_RS24030 0.44 -0.1
4,969,207 + ABID97_RS24030 0.44 -0.3
4,969,474 + ABID97_RS24030 0.71 +0.0
4,969,475 - ABID97_RS24030 0.71 +1.2
4,969,706 - -0.6

Or see this region's nucleotide sequence