Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23340 and ABID97_RS23345 are separated by 19 nucleotides ABID97_RS23345 and ABID97_RS23350 overlap by 4 nucleotides ABID97_RS23350 and ABID97_RS23355 are separated by 218 nucleotides
ABID97_RS23340: ABID97_RS23340 - alpha/beta hydrolase, at 4,827,268 to 4,828,179
_RS23340
ABID97_RS23345: ABID97_RS23345 - lipid A biosynthesis acyltransferase, at 4,828,199 to 4,829,083
_RS23345
ABID97_RS23350: ABID97_RS23350 - lysophospholipid acyltransferase family protein, at 4,829,080 to 4,829,976
_RS23350
ABID97_RS23355: ABID97_RS23355 - methionine adenosyltransferase, at 4,830,195 to 4,831,376
_RS23355
Position (kb) 4829
4830 Strain fitness (log2 ratio) -1
0
1
2
3 at 4828.203 kb on + strand at 4828.203 kb on + strand at 4828.203 kb on + strand at 4828.203 kb on + strand at 4828.204 kb on - strand at 4828.204 kb on - strand at 4828.659 kb on + strand, within ABID97_RS23345 at 4829.997 kb on + strand at 4830.034 kb on + strand at 4830.034 kb on + strand at 4830.034 kb on + strand at 4830.035 kb on - strand at 4830.057 kb on + strand at 4830.129 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 4,828,203 + +1.8 4,828,203 + +1.5 4,828,203 + +2.8 4,828,203 + +1.2 4,828,204 - +1.3 4,828,204 - +1.2 4,828,659 + ABID97_RS23345 0.52 +2.0 4,829,997 + +1.7 4,830,034 + -0.4 4,830,034 + +1.4 4,830,034 + -0.1 4,830,035 - +0.3 4,830,057 + +0.3 4,830,129 + +0.2
Or see this region's nucleotide sequence