Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21875 and ABID97_RS21880 are separated by 47 nucleotides ABID97_RS21880 and ABID97_RS21885 overlap by 4 nucleotides ABID97_RS21885 and ABID97_RS21890 overlap by 8 nucleotides ABID97_RS21890 and ABID97_RS21895 overlap by 4 nucleotides
ABID97_RS21875: ABID97_RS21875 - DUF2177 family protein, at 4,526,311 to 4,526,727
_RS21875
ABID97_RS21880: ABID97_RS21880 - DUF6134 family protein, at 4,526,775 to 4,527,419
_RS21880
ABID97_RS21885: ABID97_RS21885 - DUF1295 domain-containing protein, at 4,527,416 to 4,528,222
_RS21885
ABID97_RS21890: ABID97_RS21890 - DUF2878 domain-containing protein, at 4,528,215 to 4,528,769
_RS21890
ABID97_RS21895: ABID97_RS21895 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 4,528,766 to 4,529,809
_RS21895
Position (kb) 4527
4528
4529 Strain fitness (log2 ratio) -1
0
1
2 at 4526.450 kb on + strand, within ABID97_RS21875 at 4526.451 kb on - strand, within ABID97_RS21875 at 4526.459 kb on + strand, within ABID97_RS21875 at 4526.459 kb on + strand, within ABID97_RS21875 at 4526.459 kb on + strand, within ABID97_RS21875 at 4526.460 kb on - strand, within ABID97_RS21875 at 4526.558 kb on + strand, within ABID97_RS21875 at 4526.558 kb on + strand, within ABID97_RS21875 at 4526.559 kb on - strand, within ABID97_RS21875 at 4526.851 kb on + strand, within ABID97_RS21880 at 4526.851 kb on + strand, within ABID97_RS21880 at 4527.203 kb on - strand, within ABID97_RS21880 at 4527.471 kb on + strand at 4527.648 kb on + strand, within ABID97_RS21885 at 4527.648 kb on + strand, within ABID97_RS21885 at 4527.648 kb on + strand, within ABID97_RS21885 at 4527.649 kb on - strand, within ABID97_RS21885 at 4527.649 kb on - strand, within ABID97_RS21885 at 4527.667 kb on - strand, within ABID97_RS21885 at 4528.065 kb on + strand, within ABID97_RS21885 at 4528.065 kb on + strand, within ABID97_RS21885 at 4528.066 kb on - strand, within ABID97_RS21885 at 4528.523 kb on - strand, within ABID97_RS21890 at 4528.788 kb on + strand at 4528.789 kb on - strand at 4528.789 kb on - strand at 4528.893 kb on + strand, within ABID97_RS21895 at 4529.112 kb on + strand, within ABID97_RS21895 at 4529.113 kb on - strand, within ABID97_RS21895
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 4,526,450 + ABID97_RS21875 0.33 +0.0 4,526,451 - ABID97_RS21875 0.34 +0.1 4,526,459 + ABID97_RS21875 0.35 -0.9 4,526,459 + ABID97_RS21875 0.35 -1.4 4,526,459 + ABID97_RS21875 0.35 -0.7 4,526,460 - ABID97_RS21875 0.36 -0.2 4,526,558 + ABID97_RS21875 0.59 +0.9 4,526,558 + ABID97_RS21875 0.59 -0.9 4,526,559 - ABID97_RS21875 0.59 +0.9 4,526,851 + ABID97_RS21880 0.12 -0.1 4,526,851 + ABID97_RS21880 0.12 +0.0 4,527,203 - ABID97_RS21880 0.66 +0.5 4,527,471 + +1.9 4,527,648 + ABID97_RS21885 0.29 +0.1 4,527,648 + ABID97_RS21885 0.29 -1.1 4,527,648 + ABID97_RS21885 0.29 -0.4 4,527,649 - ABID97_RS21885 0.29 +0.0 4,527,649 - ABID97_RS21885 0.29 +0.2 4,527,667 - ABID97_RS21885 0.31 -0.8 4,528,065 + ABID97_RS21885 0.80 +1.2 4,528,065 + ABID97_RS21885 0.80 -0.1 4,528,066 - ABID97_RS21885 0.81 +0.4 4,528,523 - ABID97_RS21890 0.55 -0.7 4,528,788 + +1.3 4,528,789 - +0.7 4,528,789 - -0.2 4,528,893 + ABID97_RS21895 0.12 -0.8 4,529,112 + ABID97_RS21895 0.33 +0.5 4,529,113 - ABID97_RS21895 0.33 -0.2
Or see this region's nucleotide sequence