Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20855 and ABID97_RS20860 are separated by 40 nucleotides ABID97_RS20860 and ABID97_RS20865 are separated by 224 nucleotides ABID97_RS20865 and ABID97_RS20870 are separated by 41 nucleotides
ABID97_RS20855: ABID97_RS20855 - efflux RND transporter permease subunit, at 4,311,294 to 4,314,401
_RS20855
ABID97_RS20860: ABID97_RS20860 - efflux RND transporter periplasmic adaptor subunit, at 4,314,442 to 4,315,788
_RS20860
ABID97_RS20865: ABID97_RS20865 - DUF6622 family protein, at 4,316,013 to 4,316,534
_RS20865
ABID97_RS20870: ABID97_RS20870 - sterol desaturase family protein, at 4,316,576 to 4,317,529
_RS20870
Position (kb) 4314
4315
4316 Strain fitness (log2 ratio) -1
0
1 at 4314.731 kb on + strand, within ABID97_RS20860 at 4314.731 kb on + strand, within ABID97_RS20860 at 4314.732 kb on - strand, within ABID97_RS20860 at 4314.732 kb on - strand, within ABID97_RS20860 at 4314.732 kb on - strand, within ABID97_RS20860 at 4314.732 kb on - strand, within ABID97_RS20860 at 4314.732 kb on - strand, within ABID97_RS20860 at 4314.732 kb on - strand, within ABID97_RS20860 at 4314.737 kb on + strand, within ABID97_RS20860 at 4314.737 kb on + strand, within ABID97_RS20860 at 4314.738 kb on - strand, within ABID97_RS20860 at 4315.812 kb on - strand at 4315.812 kb on - strand at 4315.861 kb on + strand at 4316.358 kb on + strand, within ABID97_RS20865 at 4316.358 kb on + strand, within ABID97_RS20865 at 4316.436 kb on + strand, within ABID97_RS20865 at 4316.436 kb on + strand, within ABID97_RS20865 at 4316.436 kb on + strand, within ABID97_RS20865 at 4316.678 kb on + strand, within ABID97_RS20870
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 4,314,731 + ABID97_RS20860 0.21 +0.6 4,314,731 + ABID97_RS20860 0.21 +0.7 4,314,732 - ABID97_RS20860 0.22 -0.1 4,314,732 - ABID97_RS20860 0.22 +0.4 4,314,732 - ABID97_RS20860 0.22 -0.6 4,314,732 - ABID97_RS20860 0.22 +0.3 4,314,732 - ABID97_RS20860 0.22 +0.9 4,314,732 - ABID97_RS20860 0.22 -0.4 4,314,737 + ABID97_RS20860 0.22 -0.9 4,314,737 + ABID97_RS20860 0.22 -0.8 4,314,738 - ABID97_RS20860 0.22 +0.5 4,315,812 - +0.2 4,315,812 - -0.8 4,315,861 + -0.7 4,316,358 + ABID97_RS20865 0.66 -0.6 4,316,358 + ABID97_RS20865 0.66 +1.5 4,316,436 + ABID97_RS20865 0.81 +0.1 4,316,436 + ABID97_RS20865 0.81 +0.6 4,316,436 + ABID97_RS20865 0.81 -0.5 4,316,678 + ABID97_RS20870 0.11 -0.4
Or see this region's nucleotide sequence