Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20045

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20035 and ABID97_RS20040 are separated by 0 nucleotidesABID97_RS20040 and ABID97_RS20045 are separated by 35 nucleotidesABID97_RS20045 and ABID97_RS20050 are separated by 49 nucleotidesABID97_RS20050 and ABID97_RS20055 are separated by 26 nucleotides ABID97_RS20035: ABID97_RS20035 - glutamine ABC transporter ATP-binding protein, at 4,141,761 to 4,142,504 _RS20035 ABID97_RS20040: ABID97_RS20040 - amino acid ABC transporter ATP-binding protein, at 4,142,505 to 4,143,260 _RS20040 ABID97_RS20045: ABID97_RS20045 - transporter substrate-binding domain-containing protein, at 4,143,296 to 4,144,093 _RS20045 ABID97_RS20050: ABID97_RS20050 - amino acid ABC transporter permease, at 4,144,143 to 4,144,796 _RS20050 ABID97_RS20055: ABID97_RS20055 - amino acid ABC transporter permease, at 4,144,823 to 4,145,494 _RS20055 Position (kb) 4143 4144 4145Strain fitness (log2 ratio) -2 -1 0 1 2at 4142.848 kb on + strand, within ABID97_RS20040at 4142.849 kb on - strand, within ABID97_RS20040at 4142.888 kb on - strand, within ABID97_RS20040at 4144.140 kb on + strandat 4144.352 kb on - strand, within ABID97_RS20050at 4144.857 kb on + strandat 4144.903 kb on - strand, within ABID97_RS20055at 4144.924 kb on - strand, within ABID97_RS20055at 4144.924 kb on - strand, within ABID97_RS20055at 4145.053 kb on - strand, within ABID97_RS20055

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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4,142,848 + ABID97_RS20040 0.45 -0.1
4,142,849 - ABID97_RS20040 0.46 +1.1
4,142,888 - ABID97_RS20040 0.51 +1.9
4,144,140 + +0.5
4,144,352 - ABID97_RS20050 0.32 +0.0
4,144,857 + +0.1
4,144,903 - ABID97_RS20055 0.12 -1.1
4,144,924 - ABID97_RS20055 0.15 +0.1
4,144,924 - ABID97_RS20055 0.15 +0.6
4,145,053 - ABID97_RS20055 0.34 -2.4

Or see this region's nucleotide sequence