Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19765

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS19760 and ABID97_RS19765 overlap by 8 nucleotidesABID97_RS19765 and ABID97_RS19770 overlap by 1 nucleotidesABID97_RS19770 and ABID97_RS19775 are separated by 19 nucleotides ABID97_RS19760: ABID97_RS19760 - ROK family transcriptional regulator, at 4,081,591 to 4,082,826 _RS19760 ABID97_RS19765: ABID97_RS19765 - ATP-binding cassette domain-containing protein, at 4,082,819 to 4,083,625 _RS19765 ABID97_RS19770: ABID97_RS19770 - ABC transporter permease, at 4,083,625 to 4,084,584 _RS19770 ABID97_RS19775: ABID97_RS19775 - sugar ABC transporter substrate-binding protein, at 4,084,604 to 4,085,608 _RS19775 Position (kb) 4082 4083 4084Strain fitness (log2 ratio) -1 0 1 2at 4081.896 kb on - strand, within ABID97_RS19760at 4082.077 kb on - strand, within ABID97_RS19760at 4082.132 kb on + strand, within ABID97_RS19760at 4082.132 kb on + strand, within ABID97_RS19760at 4082.133 kb on - strand, within ABID97_RS19760at 4082.133 kb on - strand, within ABID97_RS19760at 4082.133 kb on - strand, within ABID97_RS19760at 4082.438 kb on + strand, within ABID97_RS19760at 4082.438 kb on + strand, within ABID97_RS19760at 4082.438 kb on + strand, within ABID97_RS19760at 4082.438 kb on + strand, within ABID97_RS19760at 4082.439 kb on - strand, within ABID97_RS19760at 4083.932 kb on + strand, within ABID97_RS19770at 4083.933 kb on - strand, within ABID97_RS19770at 4083.933 kb on - strand, within ABID97_RS19770at 4083.933 kb on - strand, within ABID97_RS19770at 4084.004 kb on + strand, within ABID97_RS19770at 4084.004 kb on + strand, within ABID97_RS19770at 4084.004 kb on + strand, within ABID97_RS19770at 4084.004 kb on + strand, within ABID97_RS19770at 4084.005 kb on - strand, within ABID97_RS19770at 4084.056 kb on - strand, within ABID97_RS19770at 4084.169 kb on + strand, within ABID97_RS19770at 4084.170 kb on - strand, within ABID97_RS19770at 4084.170 kb on - strand, within ABID97_RS19770at 4084.170 kb on - strand, within ABID97_RS19770at 4084.170 kb on - strand, within ABID97_RS19770at 4084.605 kb on + strandat 4084.605 kb on + strandat 4084.605 kb on + strandat 4084.606 kb on - strandat 4084.606 kb on - strandat 4084.606 kb on - strandat 4084.606 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
4,081,896 - ABID97_RS19760 0.25 +0.8
4,082,077 - ABID97_RS19760 0.39 -1.6
4,082,132 + ABID97_RS19760 0.44 -0.4
4,082,132 + ABID97_RS19760 0.44 +0.0
4,082,133 - ABID97_RS19760 0.44 +1.5
4,082,133 - ABID97_RS19760 0.44 +0.6
4,082,133 - ABID97_RS19760 0.44 +0.6
4,082,438 + ABID97_RS19760 0.69 -0.3
4,082,438 + ABID97_RS19760 0.69 +1.6
4,082,438 + ABID97_RS19760 0.69 +2.1
4,082,438 + ABID97_RS19760 0.69 +0.8
4,082,439 - ABID97_RS19760 0.69 +0.4
4,083,932 + ABID97_RS19770 0.32 +0.8
4,083,933 - ABID97_RS19770 0.32 +0.3
4,083,933 - ABID97_RS19770 0.32 -0.1
4,083,933 - ABID97_RS19770 0.32 +1.4
4,084,004 + ABID97_RS19770 0.39 +1.6
4,084,004 + ABID97_RS19770 0.39 -0.2
4,084,004 + ABID97_RS19770 0.39 +0.7
4,084,004 + ABID97_RS19770 0.39 +1.1
4,084,005 - ABID97_RS19770 0.40 +1.0
4,084,056 - ABID97_RS19770 0.45 +0.9
4,084,169 + ABID97_RS19770 0.57 +0.7
4,084,170 - ABID97_RS19770 0.57 +1.3
4,084,170 - ABID97_RS19770 0.57 +1.7
4,084,170 - ABID97_RS19770 0.57 +1.1
4,084,170 - ABID97_RS19770 0.57 +1.1
4,084,605 + +1.4
4,084,605 + +1.5
4,084,605 + +1.4
4,084,606 - +0.8
4,084,606 - +1.0
4,084,606 - +1.1
4,084,606 - +0.7

Or see this region's nucleotide sequence