Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19550 and ABID97_RS19555 are separated by 204 nucleotides ABID97_RS19555 and ABID97_RS19560 overlap by 4 nucleotides ABID97_RS19560 and ABID97_RS19565 are separated by 31 nucleotides ABID97_RS19565 and ABID97_RS19570 are separated by 25 nucleotides
ABID97_RS19550: ABID97_RS19550 - phosphatase PAP2 family protein, at 4,036,410 to 4,037,087
_RS19550
ABID97_RS19555: ABID97_RS19555 - response regulator transcription factor, at 4,037,292 to 4,037,966
_RS19555
ABID97_RS19560: ABID97_RS19560 - HAMP domain-containing sensor histidine kinase, at 4,037,963 to 4,039,321
_RS19560
ABID97_RS19565: ABID97_RS19565 - thioesterase family protein, at 4,039,353 to 4,039,775
_RS19565
ABID97_RS19570: ABID97_RS19570 - SDR family oxidoreductase, at 4,039,801 to 4,040,583
_RS19570
Position (kb) 4037
4038
4039
4040 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4037.183 kb on - strand at 4037.183 kb on - strand at 4037.346 kb on + strand at 4037.346 kb on + strand at 4037.347 kb on - strand at 4037.583 kb on + strand, within ABID97_RS19555 at 4038.080 kb on + strand at 4038.081 kb on - strand at 4038.081 kb on - strand at 4038.252 kb on - strand, within ABID97_RS19560 at 4038.368 kb on - strand, within ABID97_RS19560 at 4038.395 kb on + strand, within ABID97_RS19560 at 4038.395 kb on + strand, within ABID97_RS19560 at 4039.522 kb on + strand, within ABID97_RS19565 at 4039.523 kb on - strand, within ABID97_RS19565 at 4039.565 kb on - strand, within ABID97_RS19565 at 4039.565 kb on - strand, within ABID97_RS19565 at 4039.719 kb on + strand, within ABID97_RS19565 at 4039.719 kb on + strand, within ABID97_RS19565 at 4039.988 kb on + strand, within ABID97_RS19570 at 4040.085 kb on - strand, within ABID97_RS19570 at 4040.085 kb on - strand, within ABID97_RS19570 at 4040.085 kb on - strand, within ABID97_RS19570 at 4040.085 kb on - strand, within ABID97_RS19570 at 4040.153 kb on + strand, within ABID97_RS19570 at 4040.153 kb on + strand, within ABID97_RS19570 at 4040.153 kb on + strand, within ABID97_RS19570 at 4040.153 kb on + strand, within ABID97_RS19570 at 4040.249 kb on + strand, within ABID97_RS19570 at 4040.250 kb on - strand, within ABID97_RS19570 at 4040.250 kb on - strand, within ABID97_RS19570 at 4040.256 kb on - strand, within ABID97_RS19570
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 4,037,183 - +0.1 4,037,183 - -0.2 4,037,346 + +0.1 4,037,346 + -2.3 4,037,347 - +0.4 4,037,583 + ABID97_RS19555 0.43 -1.3 4,038,080 + -1.1 4,038,081 - -0.0 4,038,081 - -0.1 4,038,252 - ABID97_RS19560 0.21 +0.2 4,038,368 - ABID97_RS19560 0.30 -1.3 4,038,395 + ABID97_RS19560 0.32 +1.9 4,038,395 + ABID97_RS19560 0.32 +1.2 4,039,522 + ABID97_RS19565 0.40 +0.4 4,039,523 - ABID97_RS19565 0.40 +0.0 4,039,565 - ABID97_RS19565 0.50 +0.9 4,039,565 - ABID97_RS19565 0.50 -0.5 4,039,719 + ABID97_RS19565 0.87 +0.1 4,039,719 + ABID97_RS19565 0.87 -1.8 4,039,988 + ABID97_RS19570 0.24 +0.3 4,040,085 - ABID97_RS19570 0.36 -0.2 4,040,085 - ABID97_RS19570 0.36 -1.3 4,040,085 - ABID97_RS19570 0.36 +1.1 4,040,085 - ABID97_RS19570 0.36 -0.2 4,040,153 + ABID97_RS19570 0.45 +0.6 4,040,153 + ABID97_RS19570 0.45 +0.5 4,040,153 + ABID97_RS19570 0.45 -0.2 4,040,153 + ABID97_RS19570 0.45 -2.1 4,040,249 + ABID97_RS19570 0.57 -1.0 4,040,250 - ABID97_RS19570 0.57 -0.6 4,040,250 - ABID97_RS19570 0.57 -0.3 4,040,256 - ABID97_RS19570 0.58 -1.2
Or see this region's nucleotide sequence