Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19245 and ABID97_RS19250 are separated by 17 nucleotides ABID97_RS19250 and ABID97_RS19255 are separated by 92 nucleotides ABID97_RS19255 and ABID97_RS19260 are separated by 99 nucleotides
ABID97_RS19245: ABID97_RS19245 - aldo/keto reductase, at 3,972,535 to 3,973,371
_RS19245
ABID97_RS19250: ABID97_RS19250 - alpha/beta fold hydrolase, at 3,973,389 to 3,974,264
_RS19250
ABID97_RS19255: ABID97_RS19255 - class III extradiol ring-cleavage dioxygenase, at 3,974,357 to 3,975,175
_RS19255
ABID97_RS19260: ABID97_RS19260 - LysR family transcriptional regulator, at 3,975,275 to 3,976,216
_RS19260
Position (kb)
3974
3975
3976 Strain fitness (log2 ratio)
-1
0
1
2 at 3974.412 kb on + strand at 3974.413 kb on - strand at 3974.637 kb on + strand, within ABID97_RS19255 at 3974.638 kb on - strand, within ABID97_RS19255 at 3974.638 kb on - strand, within ABID97_RS19255 at 3974.772 kb on + strand, within ABID97_RS19255 at 3974.772 kb on + strand, within ABID97_RS19255 at 3974.914 kb on - strand, within ABID97_RS19255 at 3974.938 kb on - strand, within ABID97_RS19255 at 3974.943 kb on + strand, within ABID97_RS19255 at 3974.943 kb on + strand, within ABID97_RS19255 at 3974.943 kb on + strand, within ABID97_RS19255 at 3975.138 kb on + strand at 3975.139 kb on - strand at 3975.139 kb on - strand at 3975.157 kb on + strand at 3975.158 kb on - strand at 3975.239 kb on - strand at 3975.786 kb on - strand, within ABID97_RS19260 at 3975.786 kb on - strand, within ABID97_RS19260 at 3976.101 kb on - strand, within ABID97_RS19260
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 3,974,412 + -0.6 3,974,413 - +0.2 3,974,637 + ABID97_RS19255 0.34 +1.9 3,974,638 - ABID97_RS19255 0.34 -0.9 3,974,638 - ABID97_RS19255 0.34 -0.6 3,974,772 + ABID97_RS19255 0.51 -0.1 3,974,772 + ABID97_RS19255 0.51 +0.3 3,974,914 - ABID97_RS19255 0.68 -0.1 3,974,938 - ABID97_RS19255 0.71 -0.0 3,974,943 + ABID97_RS19255 0.72 -0.2 3,974,943 + ABID97_RS19255 0.72 -0.8 3,974,943 + ABID97_RS19255 0.72 -0.6 3,975,138 + +0.2 3,975,139 - +2.1 3,975,139 - -1.1 3,975,157 + -0.1 3,975,158 - -0.1 3,975,239 - -0.8 3,975,786 - ABID97_RS19260 0.54 +0.9 3,975,786 - ABID97_RS19260 0.54 -0.7 3,976,101 - ABID97_RS19260 0.88 +0.2
Or see this region's nucleotide sequence