Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19215

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19210 and ABID97_RS19215 are separated by 74 nucleotidesABID97_RS19215 and ABID97_RS19220 overlap by 8 nucleotides ABID97_RS19210: ABID97_RS19210 - hypothetical protein, at 3,962,684 to 3,963,622 _RS19210 ABID97_RS19215: ABID97_RS19215 - error-prone DNA polymerase, at 3,963,697 to 3,967,053 _RS19215 ABID97_RS19220: ABID97_RS19220 - DNA polymerase Y family protein, at 3,967,046 to 3,968,395 _RS19220 Position (kb) 3963 3964 3965 3966 3967 3968Strain fitness (log2 ratio) -2 -1 0 1at 3964.592 kb on + strand, within ABID97_RS19215at 3964.592 kb on + strand, within ABID97_RS19215at 3965.571 kb on - strand, within ABID97_RS19215at 3965.705 kb on + strand, within ABID97_RS19215at 3965.705 kb on + strand, within ABID97_RS19215at 3965.706 kb on - strand, within ABID97_RS19215at 3965.711 kb on + strand, within ABID97_RS19215at 3965.711 kb on + strand, within ABID97_RS19215at 3965.711 kb on + strand, within ABID97_RS19215at 3965.712 kb on - strand, within ABID97_RS19215at 3965.712 kb on - strand, within ABID97_RS19215at 3965.712 kb on - strand, within ABID97_RS19215at 3965.948 kb on + strand, within ABID97_RS19215at 3965.949 kb on - strand, within ABID97_RS19215at 3966.107 kb on + strand, within ABID97_RS19215at 3966.107 kb on + strand, within ABID97_RS19215at 3966.107 kb on + strand, within ABID97_RS19215at 3966.107 kb on + strand, within ABID97_RS19215at 3966.186 kb on - strand, within ABID97_RS19215at 3967.053 kb on + strandat 3967.155 kb on + strandat 3967.155 kb on + strandat 3967.155 kb on + strandat 3967.155 kb on + strandat 3967.156 kb on - strandat 3967.156 kb on - strandat 3967.314 kb on + strand, within ABID97_RS19220at 3967.315 kb on - strand, within ABID97_RS19220

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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3,964,592 + ABID97_RS19215 0.27 -0.4
3,964,592 + ABID97_RS19215 0.27 -0.4
3,965,571 - ABID97_RS19215 0.56 -0.4
3,965,705 + ABID97_RS19215 0.60 +1.6
3,965,705 + ABID97_RS19215 0.60 -0.5
3,965,706 - ABID97_RS19215 0.60 -0.1
3,965,711 + ABID97_RS19215 0.60 -0.2
3,965,711 + ABID97_RS19215 0.60 -0.2
3,965,711 + ABID97_RS19215 0.60 -0.4
3,965,712 - ABID97_RS19215 0.60 -0.2
3,965,712 - ABID97_RS19215 0.60 -0.4
3,965,712 - ABID97_RS19215 0.60 -1.0
3,965,948 + ABID97_RS19215 0.67 -1.1
3,965,949 - ABID97_RS19215 0.67 -1.8
3,966,107 + ABID97_RS19215 0.72 -0.5
3,966,107 + ABID97_RS19215 0.72 -0.1
3,966,107 + ABID97_RS19215 0.72 -0.5
3,966,107 + ABID97_RS19215 0.72 -0.0
3,966,186 - ABID97_RS19215 0.74 -1.2
3,967,053 + +0.5
3,967,155 + -0.9
3,967,155 + +0.2
3,967,155 + -0.2
3,967,155 + -0.6
3,967,156 - -1.7
3,967,156 - +0.6
3,967,314 + ABID97_RS19220 0.20 -1.5
3,967,315 - ABID97_RS19220 0.20 -0.9

Or see this region's nucleotide sequence