Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19150

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19140 and ABID97_RS19145 are separated by 8 nucleotidesABID97_RS19145 and ABID97_RS19150 are separated by 2 nucleotidesABID97_RS19150 and ABID97_RS19155 are separated by 30 nucleotides ABID97_RS19140: ABID97_RS19140 - glycosyltransferase, at 3,950,725 to 3,951,837 _RS19140 ABID97_RS19145: ABID97_RS19145 - hypothetical protein, at 3,951,846 to 3,952,805 _RS19145 ABID97_RS19150: ABID97_RS19150 - hypothetical protein, at 3,952,808 to 3,953,740 _RS19150 ABID97_RS19155: ABID97_RS19155 - polysaccharide biosynthesis protein, at 3,953,771 to 3,955,036 _RS19155 Position (kb) 3952 3953 3954Strain fitness (log2 ratio) -1 0 1 2at 3951.943 kb on - strand, within ABID97_RS19145at 3952.189 kb on - strand, within ABID97_RS19145at 3952.360 kb on - strand, within ABID97_RS19145at 3952.958 kb on + strand, within ABID97_RS19150at 3952.958 kb on + strand, within ABID97_RS19150at 3952.958 kb on + strand, within ABID97_RS19150at 3952.959 kb on - strand, within ABID97_RS19150at 3952.959 kb on - strand, within ABID97_RS19150at 3952.959 kb on - strand, within ABID97_RS19150at 3953.012 kb on + strand, within ABID97_RS19150at 3953.205 kb on - strand, within ABID97_RS19150at 3953.205 kb on - strand, within ABID97_RS19150at 3953.256 kb on - strand, within ABID97_RS19150at 3953.630 kb on + strand, within ABID97_RS19150at 3953.630 kb on + strand, within ABID97_RS19150at 3953.630 kb on + strand, within ABID97_RS19150at 3953.631 kb on - strand, within ABID97_RS19150at 3953.936 kb on + strand, within ABID97_RS19155at 3953.936 kb on + strand, within ABID97_RS19155at 3954.258 kb on + strand, within ABID97_RS19155

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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3,951,943 - ABID97_RS19145 0.10 -0.4
3,952,189 - ABID97_RS19145 0.36 -0.1
3,952,360 - ABID97_RS19145 0.54 -1.4
3,952,958 + ABID97_RS19150 0.16 +0.2
3,952,958 + ABID97_RS19150 0.16 +1.0
3,952,958 + ABID97_RS19150 0.16 -0.1
3,952,959 - ABID97_RS19150 0.16 +2.5
3,952,959 - ABID97_RS19150 0.16 +0.6
3,952,959 - ABID97_RS19150 0.16 -0.1
3,953,012 + ABID97_RS19150 0.22 +0.3
3,953,205 - ABID97_RS19150 0.43 -1.2
3,953,205 - ABID97_RS19150 0.43 -1.1
3,953,256 - ABID97_RS19150 0.48 -0.1
3,953,630 + ABID97_RS19150 0.88 -0.3
3,953,630 + ABID97_RS19150 0.88 -0.9
3,953,630 + ABID97_RS19150 0.88 -0.6
3,953,631 - ABID97_RS19150 0.88 +2.5
3,953,936 + ABID97_RS19155 0.13 -0.1
3,953,936 + ABID97_RS19155 0.13 +0.8
3,954,258 + ABID97_RS19155 0.38 +0.6

Or see this region's nucleotide sequence