Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15980 and ABID97_RS15985 overlap by 4 nucleotides ABID97_RS15985 and ABID97_RS15990 overlap by 4 nucleotides ABID97_RS15990 and ABID97_RS15995 overlap by 4 nucleotides ABID97_RS15995 and ABID97_RS16000 are separated by 118 nucleotides
ABID97_RS15980: ABID97_RS15980 - endolytic transglycosylase MltG, at 3,310,780 to 3,311,817
_RS15980
ABID97_RS15985: ABID97_RS15985 - dTMP kinase, at 3,311,814 to 3,312,488
_RS15985
ABID97_RS15990: ABID97_RS15990 - DNA polymerase III subunit delta', at 3,312,485 to 3,313,507
_RS15990
ABID97_RS15995: ABID97_RS15995 - PilZ domain-containing protein, at 3,313,504 to 3,313,881
_RS15995
ABID97_RS16000: ABID97_RS16000 - TatD family hydrolase, at 3,314,000 to 3,314,809
_RS16000
Position (kb) 3312
3313
3314 Strain fitness (log2 ratio) -1
0
1 at 3313.600 kb on + strand, within ABID97_RS15995 at 3313.601 kb on - strand, within ABID97_RS15995 at 3313.672 kb on + strand, within ABID97_RS15995 at 3313.672 kb on + strand, within ABID97_RS15995 at 3313.672 kb on + strand, within ABID97_RS15995 at 3313.673 kb on - strand, within ABID97_RS15995 at 3313.673 kb on - strand, within ABID97_RS15995 at 3313.673 kb on - strand, within ABID97_RS15995 at 3313.673 kb on - strand, within ABID97_RS15995 at 3313.879 kb on + strand at 3313.880 kb on - strand at 3313.880 kb on - strand at 3314.285 kb on + strand, within ABID97_RS16000 at 3314.289 kb on - strand, within ABID97_RS16000 at 3314.289 kb on - strand, within ABID97_RS16000
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 3,313,600 + ABID97_RS15995 0.25 -0.0 3,313,601 - ABID97_RS15995 0.26 +0.1 3,313,672 + ABID97_RS15995 0.44 -1.5 3,313,672 + ABID97_RS15995 0.44 -0.0 3,313,672 + ABID97_RS15995 0.44 -1.6 3,313,673 - ABID97_RS15995 0.45 -1.5 3,313,673 - ABID97_RS15995 0.45 -0.4 3,313,673 - ABID97_RS15995 0.45 -0.9 3,313,673 - ABID97_RS15995 0.45 -0.2 3,313,879 + +1.4 3,313,880 - -0.1 3,313,880 - -1.2 3,314,285 + ABID97_RS16000 0.35 -1.1 3,314,289 - ABID97_RS16000 0.36 -0.1 3,314,289 - ABID97_RS16000 0.36 -0.4
Or see this region's nucleotide sequence