Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS14680 and ABID97_RS14690 are separated by 295 nucleotides ABID97_RS14690 and ABID97_RS14695 are separated by 97 nucleotides ABID97_RS14695 and ABID97_RS14700 are separated by 7 nucleotides
ABID97_RS14680: ABID97_RS14680 - methyltransferase domain-containing protein, at 3,055,288 to 3,056,160
_RS14680
ABID97_RS14690: ABID97_RS14690 - DNA polymerase III subunit gamma/tau, at 3,056,456 to 3,058,309
_RS14690
ABID97_RS14695: ABID97_RS14695 - YbaB/EbfC family nucleoid-associated protein, at 3,058,407 to 3,058,739
_RS14695
ABID97_RS14700: ABID97_RS14700 - recombination mediator RecR, at 3,058,747 to 3,059,337
_RS14700
Position (kb)
3056
3057
3058
3059 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3055.699 kb on + strand, within ABID97_RS14680 at 3055.777 kb on + strand, within ABID97_RS14680 at 3055.943 kb on + strand, within ABID97_RS14680 at 3056.037 kb on - strand, within ABID97_RS14680 at 3056.233 kb on - strand at 3056.443 kb on + strand at 3056.443 kb on + strand at 3056.444 kb on - strand at 3058.372 kb on - strand at 3058.372 kb on - strand at 3058.372 kb on - strand at 3059.056 kb on + strand, within ABID97_RS14700 at 3059.057 kb on - strand, within ABID97_RS14700 at 3059.057 kb on - strand, within ABID97_RS14700 at 3059.057 kb on - strand, within ABID97_RS14700 at 3059.290 kb on + strand at 3059.291 kb on - strand at 3059.291 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 3,055,699 + ABID97_RS14680 0.47 -0.6 3,055,777 + ABID97_RS14680 0.56 +0.4 3,055,943 + ABID97_RS14680 0.75 -0.1 3,056,037 - ABID97_RS14680 0.86 -0.3 3,056,233 - -0.9 3,056,443 + +0.2 3,056,443 + -1.0 3,056,444 - -0.0 3,058,372 - -0.4 3,058,372 - +0.6 3,058,372 - -0.9 3,059,056 + ABID97_RS14700 0.52 -1.3 3,059,057 - ABID97_RS14700 0.52 -1.6 3,059,057 - ABID97_RS14700 0.52 -0.9 3,059,057 - ABID97_RS14700 0.52 +2.0 3,059,290 + +0.4 3,059,291 - -0.3 3,059,291 - -2.1
Or see this region's nucleotide sequence