Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14690

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14680 and ABID97_RS14690 are separated by 295 nucleotidesABID97_RS14690 and ABID97_RS14695 are separated by 97 nucleotidesABID97_RS14695 and ABID97_RS14700 are separated by 7 nucleotides ABID97_RS14680: ABID97_RS14680 - methyltransferase domain-containing protein, at 3,055,288 to 3,056,160 _RS14680 ABID97_RS14690: ABID97_RS14690 - DNA polymerase III subunit gamma/tau, at 3,056,456 to 3,058,309 _RS14690 ABID97_RS14695: ABID97_RS14695 - YbaB/EbfC family nucleoid-associated protein, at 3,058,407 to 3,058,739 _RS14695 ABID97_RS14700: ABID97_RS14700 - recombination mediator RecR, at 3,058,747 to 3,059,337 _RS14700 Position (kb) 3056 3057 3058 3059Strain fitness (log2 ratio) -2 -1 0 1 2at 3055.699 kb on + strand, within ABID97_RS14680at 3055.777 kb on + strand, within ABID97_RS14680at 3055.943 kb on + strand, within ABID97_RS14680at 3056.037 kb on - strand, within ABID97_RS14680at 3056.233 kb on - strandat 3056.443 kb on + strandat 3056.443 kb on + strandat 3056.444 kb on - strandat 3058.372 kb on - strandat 3058.372 kb on - strandat 3058.372 kb on - strandat 3059.056 kb on + strand, within ABID97_RS14700at 3059.057 kb on - strand, within ABID97_RS14700at 3059.057 kb on - strand, within ABID97_RS14700at 3059.057 kb on - strand, within ABID97_RS14700at 3059.290 kb on + strandat 3059.291 kb on - strandat 3059.291 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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3,055,699 + ABID97_RS14680 0.47 -0.6
3,055,777 + ABID97_RS14680 0.56 +0.4
3,055,943 + ABID97_RS14680 0.75 -0.1
3,056,037 - ABID97_RS14680 0.86 -0.3
3,056,233 - -0.9
3,056,443 + +0.2
3,056,443 + -1.0
3,056,444 - -0.0
3,058,372 - -0.4
3,058,372 - +0.6
3,058,372 - -0.9
3,059,056 + ABID97_RS14700 0.52 -1.3
3,059,057 - ABID97_RS14700 0.52 -1.6
3,059,057 - ABID97_RS14700 0.52 -0.9
3,059,057 - ABID97_RS14700 0.52 +2.0
3,059,290 + +0.4
3,059,291 - -0.3
3,059,291 - -2.1

Or see this region's nucleotide sequence