Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14155

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14150 and ABID97_RS14155 are separated by 13 nucleotidesABID97_RS14155 and ABID97_RS14160 are separated by 4 nucleotides ABID97_RS14150: ABID97_RS14150 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 2,942,961 to 2,944,217 _RS14150 ABID97_RS14155: ABID97_RS14155 - dihydrolipoyl dehydrogenase, at 2,944,231 to 2,945,661 _RS14155 ABID97_RS14160: ABID97_RS14160 - cell division protein ZapE, at 2,945,666 to 2,946,766 _RS14160 Position (kb) 2944 2945 2946Strain fitness (log2 ratio) -3 -2 -1 0 1at 2945.687 kb on + strandat 2945.687 kb on + strandat 2945.688 kb on - strandat 2945.849 kb on + strand, within ABID97_RS14160at 2945.849 kb on + strand, within ABID97_RS14160at 2945.849 kb on + strand, within ABID97_RS14160at 2945.850 kb on - strand, within ABID97_RS14160at 2946.035 kb on + strand, within ABID97_RS14160at 2946.035 kb on + strand, within ABID97_RS14160at 2946.036 kb on - strand, within ABID97_RS14160at 2946.296 kb on + strand, within ABID97_RS14160at 2946.297 kb on - strand, within ABID97_RS14160at 2946.297 kb on - strand, within ABID97_RS14160at 2946.297 kb on - strand, within ABID97_RS14160at 2946.297 kb on - strand, within ABID97_RS14160at 2946.297 kb on - strand, within ABID97_RS14160at 2946.297 kb on - strand, within ABID97_RS14160at 2946.485 kb on + strand, within ABID97_RS14160at 2946.596 kb on + strand, within ABID97_RS14160at 2946.650 kb on + strand, within ABID97_RS14160at 2946.651 kb on - strand, within ABID97_RS14160

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,945,687 + -1.7
2,945,687 + +0.4
2,945,688 - -2.2
2,945,849 + ABID97_RS14160 0.17 -0.8
2,945,849 + ABID97_RS14160 0.17 -3.4
2,945,849 + ABID97_RS14160 0.17 -1.4
2,945,850 - ABID97_RS14160 0.17 -0.1
2,946,035 + ABID97_RS14160 0.34 -1.4
2,946,035 + ABID97_RS14160 0.34 -1.6
2,946,036 - ABID97_RS14160 0.34 -1.9
2,946,296 + ABID97_RS14160 0.57 -2.5
2,946,297 - ABID97_RS14160 0.57 -2.0
2,946,297 - ABID97_RS14160 0.57 -2.2
2,946,297 - ABID97_RS14160 0.57 -0.4
2,946,297 - ABID97_RS14160 0.57 -0.8
2,946,297 - ABID97_RS14160 0.57 -0.5
2,946,297 - ABID97_RS14160 0.57 -2.4
2,946,485 + ABID97_RS14160 0.74 -1.0
2,946,596 + ABID97_RS14160 0.84 -0.9
2,946,650 + ABID97_RS14160 0.89 -2.8
2,946,651 - ABID97_RS14160 0.89 -1.2

Or see this region's nucleotide sequence