Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13545

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13540 and ABID97_RS13545 are separated by 52 nucleotidesABID97_RS13545 and ABID97_RS13550 are separated by 7 nucleotidesABID97_RS13550 and ABID97_RS13555 overlap by 8 nucleotides ABID97_RS13540: ABID97_RS13540 - FAD-dependent oxidoreductase, at 2,821,544 to 2,823,007 _RS13540 ABID97_RS13545: ABID97_RS13545 - ABC transporter substrate-binding protein, at 2,823,060 to 2,824,259 _RS13545 ABID97_RS13550: ABID97_RS13550 - branched-chain amino acid ABC transporter permease, at 2,824,267 to 2,825,124 _RS13550 ABID97_RS13555: ABID97_RS13555 - branched-chain amino acid ABC transporter permease, at 2,825,117 to 2,826,079 _RS13555 Position (kb) 2823 2824 2825Strain fitness (log2 ratio) -1 0 1at 2822.255 kb on + strand, within ABID97_RS13540at 2822.259 kb on - strand, within ABID97_RS13540at 2822.320 kb on - strand, within ABID97_RS13540at 2822.787 kb on - strandat 2822.885 kb on + strandat 2822.912 kb on + strandat 2822.913 kb on - strandat 2823.502 kb on - strand, within ABID97_RS13545at 2823.565 kb on - strand, within ABID97_RS13545at 2823.661 kb on - strand, within ABID97_RS13545at 2823.942 kb on + strand, within ABID97_RS13545at 2824.080 kb on + strand, within ABID97_RS13545at 2824.081 kb on - strand, within ABID97_RS13545at 2824.191 kb on + strandat 2824.319 kb on - strandat 2824.409 kb on - strand, within ABID97_RS13550at 2824.525 kb on + strand, within ABID97_RS13550at 2824.832 kb on - strand, within ABID97_RS13550

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,822,255 + ABID97_RS13540 0.49 -0.9
2,822,259 - ABID97_RS13540 0.49 +0.1
2,822,320 - ABID97_RS13540 0.53 -0.1
2,822,787 - +0.9
2,822,885 + -0.9
2,822,912 + +0.2
2,822,913 - +0.0
2,823,502 - ABID97_RS13545 0.37 -0.6
2,823,565 - ABID97_RS13545 0.42 -0.3
2,823,661 - ABID97_RS13545 0.50 -0.5
2,823,942 + ABID97_RS13545 0.73 -0.7
2,824,080 + ABID97_RS13545 0.85 -0.4
2,824,081 - ABID97_RS13545 0.85 +0.2
2,824,191 + +0.4
2,824,319 - -1.0
2,824,409 - ABID97_RS13550 0.17 -1.1
2,824,525 + ABID97_RS13550 0.30 -0.3
2,824,832 - ABID97_RS13550 0.66 -0.8

Or see this region's nucleotide sequence