Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13540 and ABID97_RS13545 are separated by 52 nucleotides ABID97_RS13545 and ABID97_RS13550 are separated by 7 nucleotides ABID97_RS13550 and ABID97_RS13555 overlap by 8 nucleotides
ABID97_RS13540: ABID97_RS13540 - FAD-dependent oxidoreductase, at 2,821,544 to 2,823,007
_RS13540
ABID97_RS13545: ABID97_RS13545 - ABC transporter substrate-binding protein, at 2,823,060 to 2,824,259
_RS13545
ABID97_RS13550: ABID97_RS13550 - branched-chain amino acid ABC transporter permease, at 2,824,267 to 2,825,124
_RS13550
ABID97_RS13555: ABID97_RS13555 - branched-chain amino acid ABC transporter permease, at 2,825,117 to 2,826,079
_RS13555
Position (kb)
2823
2824
2825 Strain fitness (log2 ratio)
-1
0
1 at 2822.255 kb on + strand, within ABID97_RS13540 at 2822.259 kb on - strand, within ABID97_RS13540 at 2822.320 kb on - strand, within ABID97_RS13540 at 2822.787 kb on - strand at 2822.885 kb on + strand at 2822.912 kb on + strand at 2822.913 kb on - strand at 2823.502 kb on - strand, within ABID97_RS13545 at 2823.565 kb on - strand, within ABID97_RS13545 at 2823.661 kb on - strand, within ABID97_RS13545 at 2823.942 kb on + strand, within ABID97_RS13545 at 2824.080 kb on + strand, within ABID97_RS13545 at 2824.081 kb on - strand, within ABID97_RS13545 at 2824.191 kb on + strand at 2824.319 kb on - strand at 2824.409 kb on - strand, within ABID97_RS13550 at 2824.525 kb on + strand, within ABID97_RS13550 at 2824.832 kb on - strand, within ABID97_RS13550
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 2,822,255 + ABID97_RS13540 0.49 -0.9 2,822,259 - ABID97_RS13540 0.49 +0.1 2,822,320 - ABID97_RS13540 0.53 -0.1 2,822,787 - +0.9 2,822,885 + -0.9 2,822,912 + +0.2 2,822,913 - +0.0 2,823,502 - ABID97_RS13545 0.37 -0.6 2,823,565 - ABID97_RS13545 0.42 -0.3 2,823,661 - ABID97_RS13545 0.50 -0.5 2,823,942 + ABID97_RS13545 0.73 -0.7 2,824,080 + ABID97_RS13545 0.85 -0.4 2,824,081 - ABID97_RS13545 0.85 +0.2 2,824,191 + +0.4 2,824,319 - -1.0 2,824,409 - ABID97_RS13550 0.17 -1.1 2,824,525 + ABID97_RS13550 0.30 -0.3 2,824,832 - ABID97_RS13550 0.66 -0.8
Or see this region's nucleotide sequence