Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13220 and ABID97_RS13225 are separated by 39 nucleotides ABID97_RS13225 and ABID97_RS13230 are separated by 84 nucleotides
ABID97_RS13220: ABID97_RS13220 - aldehyde dehydrogenase, at 2,754,268 to 2,755,719
_RS13220
ABID97_RS13225: ABID97_RS13225 - benzoylformate decarboxylase, at 2,755,759 to 2,757,387
_RS13225
ABID97_RS13230: ABID97_RS13230 - LysR family transcriptional regulator, at 2,757,472 to 2,758,386
_RS13230
Position (kb)
2755
2756
2757
2758 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2754.990 kb on - strand, within ABID97_RS13220 at 2755.958 kb on + strand, within ABID97_RS13225 at 2755.971 kb on - strand, within ABID97_RS13225 at 2756.045 kb on + strand, within ABID97_RS13225 at 2756.045 kb on + strand, within ABID97_RS13225 at 2756.045 kb on + strand, within ABID97_RS13225 at 2756.046 kb on - strand, within ABID97_RS13225 at 2756.511 kb on - strand, within ABID97_RS13225 at 2756.906 kb on + strand, within ABID97_RS13225 at 2756.906 kb on + strand, within ABID97_RS13225 at 2756.907 kb on - strand, within ABID97_RS13225 at 2756.909 kb on + strand, within ABID97_RS13225 at 2756.909 kb on + strand, within ABID97_RS13225 at 2756.974 kb on - strand, within ABID97_RS13225 at 2757.398 kb on - strand at 2757.398 kb on - strand at 2757.777 kb on + strand, within ABID97_RS13230 at 2757.778 kb on - strand, within ABID97_RS13230 at 2757.849 kb on - strand, within ABID97_RS13230 at 2758.072 kb on + strand, within ABID97_RS13230 at 2758.073 kb on - strand, within ABID97_RS13230
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 2,754,990 - ABID97_RS13220 0.50 -0.5 2,755,958 + ABID97_RS13225 0.12 -0.6 2,755,971 - ABID97_RS13225 0.13 -0.6 2,756,045 + ABID97_RS13225 0.18 -0.3 2,756,045 + ABID97_RS13225 0.18 -0.2 2,756,045 + ABID97_RS13225 0.18 -0.1 2,756,046 - ABID97_RS13225 0.18 -1.1 2,756,511 - ABID97_RS13225 0.46 -1.0 2,756,906 + ABID97_RS13225 0.70 +0.3 2,756,906 + ABID97_RS13225 0.70 -1.2 2,756,907 - ABID97_RS13225 0.70 -0.2 2,756,909 + ABID97_RS13225 0.71 -0.8 2,756,909 + ABID97_RS13225 0.71 -1.3 2,756,974 - ABID97_RS13225 0.75 -1.3 2,757,398 - -1.2 2,757,398 - -2.9 2,757,777 + ABID97_RS13230 0.33 -1.4 2,757,778 - ABID97_RS13230 0.33 -0.1 2,757,849 - ABID97_RS13230 0.41 -0.1 2,758,072 + ABID97_RS13230 0.66 +0.4 2,758,073 - ABID97_RS13230 0.66 -0.7
Or see this region's nucleotide sequence