Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13225

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13220 and ABID97_RS13225 are separated by 39 nucleotidesABID97_RS13225 and ABID97_RS13230 are separated by 84 nucleotides ABID97_RS13220: ABID97_RS13220 - aldehyde dehydrogenase, at 2,754,268 to 2,755,719 _RS13220 ABID97_RS13225: ABID97_RS13225 - benzoylformate decarboxylase, at 2,755,759 to 2,757,387 _RS13225 ABID97_RS13230: ABID97_RS13230 - LysR family transcriptional regulator, at 2,757,472 to 2,758,386 _RS13230 Position (kb) 2755 2756 2757 2758Strain fitness (log2 ratio) -3 -2 -1 0 1at 2754.990 kb on - strand, within ABID97_RS13220at 2755.958 kb on + strand, within ABID97_RS13225at 2755.971 kb on - strand, within ABID97_RS13225at 2756.045 kb on + strand, within ABID97_RS13225at 2756.045 kb on + strand, within ABID97_RS13225at 2756.045 kb on + strand, within ABID97_RS13225at 2756.046 kb on - strand, within ABID97_RS13225at 2756.511 kb on - strand, within ABID97_RS13225at 2756.906 kb on + strand, within ABID97_RS13225at 2756.906 kb on + strand, within ABID97_RS13225at 2756.907 kb on - strand, within ABID97_RS13225at 2756.909 kb on + strand, within ABID97_RS13225at 2756.909 kb on + strand, within ABID97_RS13225at 2756.974 kb on - strand, within ABID97_RS13225at 2757.398 kb on - strandat 2757.398 kb on - strandat 2757.777 kb on + strand, within ABID97_RS13230at 2757.778 kb on - strand, within ABID97_RS13230at 2757.849 kb on - strand, within ABID97_RS13230at 2758.072 kb on + strand, within ABID97_RS13230at 2758.073 kb on - strand, within ABID97_RS13230

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,754,990 - ABID97_RS13220 0.50 -0.5
2,755,958 + ABID97_RS13225 0.12 -0.6
2,755,971 - ABID97_RS13225 0.13 -0.6
2,756,045 + ABID97_RS13225 0.18 -0.3
2,756,045 + ABID97_RS13225 0.18 -0.2
2,756,045 + ABID97_RS13225 0.18 -0.1
2,756,046 - ABID97_RS13225 0.18 -1.1
2,756,511 - ABID97_RS13225 0.46 -1.0
2,756,906 + ABID97_RS13225 0.70 +0.3
2,756,906 + ABID97_RS13225 0.70 -1.2
2,756,907 - ABID97_RS13225 0.70 -0.2
2,756,909 + ABID97_RS13225 0.71 -0.8
2,756,909 + ABID97_RS13225 0.71 -1.3
2,756,974 - ABID97_RS13225 0.75 -1.3
2,757,398 - -1.2
2,757,398 - -2.9
2,757,777 + ABID97_RS13230 0.33 -1.4
2,757,778 - ABID97_RS13230 0.33 -0.1
2,757,849 - ABID97_RS13230 0.41 -0.1
2,758,072 + ABID97_RS13230 0.66 +0.4
2,758,073 - ABID97_RS13230 0.66 -0.7

Or see this region's nucleotide sequence