Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13025

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS13020 and ABID97_RS13025 are separated by 157 nucleotidesABID97_RS13025 and ABID97_RS13030 are separated by 85 nucleotides ABID97_RS13020: ABID97_RS13020 - serine hydrolase, at 2,706,469 to 2,708,160 _RS13020 ABID97_RS13025: ABID97_RS13025 - helix-turn-helix domain-containing protein, at 2,708,318 to 2,709,316 _RS13025 ABID97_RS13030: ABID97_RS13030 - AraC family transcriptional regulator, at 2,709,402 to 2,710,391 _RS13030 Position (kb) 2708 2709 2710Strain fitness (log2 ratio) -1 0 1at 2707.346 kb on - strand, within ABID97_RS13020at 2707.357 kb on + strand, within ABID97_RS13020at 2707.811 kb on - strand, within ABID97_RS13020at 2707.906 kb on + strand, within ABID97_RS13020at 2707.906 kb on + strand, within ABID97_RS13020at 2708.114 kb on - strandat 2708.117 kb on - strandat 2708.190 kb on + strandat 2708.487 kb on - strand, within ABID97_RS13025at 2709.344 kb on - strandat 2709.555 kb on + strand, within ABID97_RS13030at 2709.704 kb on - strand, within ABID97_RS13030at 2709.718 kb on + strand, within ABID97_RS13030at 2709.719 kb on - strand, within ABID97_RS13030at 2709.719 kb on - strand, within ABID97_RS13030

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
2,707,346 - ABID97_RS13020 0.52 +0.2
2,707,357 + ABID97_RS13020 0.52 -0.6
2,707,811 - ABID97_RS13020 0.79 +0.3
2,707,906 + ABID97_RS13020 0.85 -0.4
2,707,906 + ABID97_RS13020 0.85 +0.0
2,708,114 - +0.4
2,708,117 - -0.5
2,708,190 + +0.3
2,708,487 - ABID97_RS13025 0.17 +0.2
2,709,344 - -0.5
2,709,555 + ABID97_RS13030 0.15 +0.1
2,709,704 - ABID97_RS13030 0.31 +1.0
2,709,718 + ABID97_RS13030 0.32 -0.3
2,709,719 - ABID97_RS13030 0.32 -0.2
2,709,719 - ABID97_RS13030 0.32 -0.1

Or see this region's nucleotide sequence