Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10845

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10830 and ABID97_RS10835 are separated by 21 nucleotidesABID97_RS10835 and ABID97_RS10840 are separated by 12 nucleotidesABID97_RS10840 and ABID97_RS10845 are separated by 175 nucleotidesABID97_RS10845 and ABID97_RS10850 are separated by 10 nucleotidesABID97_RS10850 and ABID97_RS10855 are separated by 55 nucleotides ABID97_RS10830: ABID97_RS10830 - primosomal replication protein N, at 2,245,792 to 2,246,109 _RS10830 ABID97_RS10835: ABID97_RS10835 - 30S ribosomal protein S18, at 2,246,131 to 2,246,412 _RS10835 ABID97_RS10840: ABID97_RS10840 - 50S ribosomal protein L9, at 2,246,425 to 2,246,877 _RS10840 ABID97_RS10845: ABID97_RS10845 - replicative DNA helicase, at 2,247,053 to 2,248,462 _RS10845 ABID97_RS10850: ABID97_RS10850 - YafY family protein, at 2,248,473 to 2,249,189 _RS10850 ABID97_RS10855: ABID97_RS10855 - GyrI-like domain-containing protein, at 2,249,245 to 2,249,712 _RS10855 Position (kb) 2247 2248 2249Strain fitness (log2 ratio) -2 -1 0 1 2at 2246.743 kb on + strand, within ABID97_RS10840at 2246.743 kb on + strand, within ABID97_RS10840at 2246.743 kb on + strand, within ABID97_RS10840at 2246.743 kb on + strand, within ABID97_RS10840at 2246.744 kb on - strand, within ABID97_RS10840at 2246.744 kb on - strand, within ABID97_RS10840at 2246.995 kb on + strandat 2247.024 kb on + strandat 2247.024 kb on + strandat 2247.025 kb on - strandat 2247.025 kb on - strandat 2248.439 kb on + strandat 2248.440 kb on - strandat 2248.457 kb on + strandat 2248.457 kb on + strandat 2248.647 kb on - strand, within ABID97_RS10850at 2248.673 kb on - strand, within ABID97_RS10850at 2248.673 kb on - strand, within ABID97_RS10850at 2248.730 kb on - strand, within ABID97_RS10850at 2248.730 kb on - strand, within ABID97_RS10850at 2248.822 kb on + strand, within ABID97_RS10850at 2248.823 kb on - strand, within ABID97_RS10850at 2248.823 kb on - strand, within ABID97_RS10850at 2249.080 kb on + strand, within ABID97_RS10850at 2249.080 kb on + strand, within ABID97_RS10850at 2249.081 kb on - strand, within ABID97_RS10850at 2249.242 kb on + strandat 2249.242 kb on + strandat 2249.242 kb on + strandat 2249.242 kb on + strandat 2249.243 kb on - strandat 2249.243 kb on - strandat 2249.243 kb on - strandat 2249.289 kb on - strandat 2249.289 kb on - strandat 2249.411 kb on + strand, within ABID97_RS10855at 2249.411 kb on + strand, within ABID97_RS10855at 2249.432 kb on - strand, within ABID97_RS10855at 2249.432 kb on - strand, within ABID97_RS10855

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,246,743 + ABID97_RS10840 0.70 -0.6
2,246,743 + ABID97_RS10840 0.70 -1.9
2,246,743 + ABID97_RS10840 0.70 -0.3
2,246,743 + ABID97_RS10840 0.70 -0.5
2,246,744 - ABID97_RS10840 0.70 -1.0
2,246,744 - ABID97_RS10840 0.70 +0.0
2,246,995 + -0.4
2,247,024 + -0.5
2,247,024 + -0.6
2,247,025 - +0.0
2,247,025 - -1.1
2,248,439 + -0.5
2,248,440 - +0.1
2,248,457 + +0.8
2,248,457 + +0.4
2,248,647 - ABID97_RS10850 0.24 -0.4
2,248,673 - ABID97_RS10850 0.28 -0.9
2,248,673 - ABID97_RS10850 0.28 +0.0
2,248,730 - ABID97_RS10850 0.36 +0.1
2,248,730 - ABID97_RS10850 0.36 -2.2
2,248,822 + ABID97_RS10850 0.49 +1.2
2,248,823 - ABID97_RS10850 0.49 +0.1
2,248,823 - ABID97_RS10850 0.49 -0.6
2,249,080 + ABID97_RS10850 0.85 +0.1
2,249,080 + ABID97_RS10850 0.85 -0.2
2,249,081 - ABID97_RS10850 0.85 +0.2
2,249,242 + -0.1
2,249,242 + +0.3
2,249,242 + +1.0
2,249,242 + +1.3
2,249,243 - -0.1
2,249,243 - +0.1
2,249,243 - +0.2
2,249,289 - +1.0
2,249,289 - +1.3
2,249,411 + ABID97_RS10855 0.35 +1.8
2,249,411 + ABID97_RS10855 0.35 -0.9
2,249,432 - ABID97_RS10855 0.40 +0.6
2,249,432 - ABID97_RS10855 0.40 +0.7

Or see this region's nucleotide sequence