Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS10830 and ABID97_RS10835 are separated by 21 nucleotides ABID97_RS10835 and ABID97_RS10840 are separated by 12 nucleotides ABID97_RS10840 and ABID97_RS10845 are separated by 175 nucleotides ABID97_RS10845 and ABID97_RS10850 are separated by 10 nucleotides ABID97_RS10850 and ABID97_RS10855 are separated by 55 nucleotides
ABID97_RS10830: ABID97_RS10830 - primosomal replication protein N, at 2,245,792 to 2,246,109
_RS10830
ABID97_RS10835: ABID97_RS10835 - 30S ribosomal protein S18, at 2,246,131 to 2,246,412
_RS10835
ABID97_RS10840: ABID97_RS10840 - 50S ribosomal protein L9, at 2,246,425 to 2,246,877
_RS10840
ABID97_RS10845: ABID97_RS10845 - replicative DNA helicase, at 2,247,053 to 2,248,462
_RS10845
ABID97_RS10850: ABID97_RS10850 - YafY family protein, at 2,248,473 to 2,249,189
_RS10850
ABID97_RS10855: ABID97_RS10855 - GyrI-like domain-containing protein, at 2,249,245 to 2,249,712
_RS10855
Position (kb)
2247
2248
2249 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2246.743 kb on + strand, within ABID97_RS10840 at 2246.743 kb on + strand, within ABID97_RS10840 at 2246.743 kb on + strand, within ABID97_RS10840 at 2246.743 kb on + strand, within ABID97_RS10840 at 2246.744 kb on - strand, within ABID97_RS10840 at 2246.744 kb on - strand, within ABID97_RS10840 at 2246.995 kb on + strand at 2247.024 kb on + strand at 2247.024 kb on + strand at 2247.025 kb on - strand at 2247.025 kb on - strand at 2248.439 kb on + strand at 2248.440 kb on - strand at 2248.457 kb on + strand at 2248.457 kb on + strand at 2248.647 kb on - strand, within ABID97_RS10850 at 2248.673 kb on - strand, within ABID97_RS10850 at 2248.673 kb on - strand, within ABID97_RS10850 at 2248.730 kb on - strand, within ABID97_RS10850 at 2248.730 kb on - strand, within ABID97_RS10850 at 2248.822 kb on + strand, within ABID97_RS10850 at 2248.823 kb on - strand, within ABID97_RS10850 at 2248.823 kb on - strand, within ABID97_RS10850 at 2249.080 kb on + strand, within ABID97_RS10850 at 2249.080 kb on + strand, within ABID97_RS10850 at 2249.081 kb on - strand, within ABID97_RS10850 at 2249.242 kb on + strand at 2249.242 kb on + strand at 2249.242 kb on + strand at 2249.242 kb on + strand at 2249.243 kb on - strand at 2249.243 kb on - strand at 2249.243 kb on - strand at 2249.289 kb on - strand at 2249.289 kb on - strand at 2249.411 kb on + strand, within ABID97_RS10855 at 2249.411 kb on + strand, within ABID97_RS10855 at 2249.432 kb on - strand, within ABID97_RS10855 at 2249.432 kb on - strand, within ABID97_RS10855
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 2,246,743 + ABID97_RS10840 0.70 -0.6 2,246,743 + ABID97_RS10840 0.70 -1.9 2,246,743 + ABID97_RS10840 0.70 -0.3 2,246,743 + ABID97_RS10840 0.70 -0.5 2,246,744 - ABID97_RS10840 0.70 -1.0 2,246,744 - ABID97_RS10840 0.70 +0.0 2,246,995 + -0.4 2,247,024 + -0.5 2,247,024 + -0.6 2,247,025 - +0.0 2,247,025 - -1.1 2,248,439 + -0.5 2,248,440 - +0.1 2,248,457 + +0.8 2,248,457 + +0.4 2,248,647 - ABID97_RS10850 0.24 -0.4 2,248,673 - ABID97_RS10850 0.28 -0.9 2,248,673 - ABID97_RS10850 0.28 +0.0 2,248,730 - ABID97_RS10850 0.36 +0.1 2,248,730 - ABID97_RS10850 0.36 -2.2 2,248,822 + ABID97_RS10850 0.49 +1.2 2,248,823 - ABID97_RS10850 0.49 +0.1 2,248,823 - ABID97_RS10850 0.49 -0.6 2,249,080 + ABID97_RS10850 0.85 +0.1 2,249,080 + ABID97_RS10850 0.85 -0.2 2,249,081 - ABID97_RS10850 0.85 +0.2 2,249,242 + -0.1 2,249,242 + +0.3 2,249,242 + +1.0 2,249,242 + +1.3 2,249,243 - -0.1 2,249,243 - +0.1 2,249,243 - +0.2 2,249,289 - +1.0 2,249,289 - +1.3 2,249,411 + ABID97_RS10855 0.35 +1.8 2,249,411 + ABID97_RS10855 0.35 -0.9 2,249,432 - ABID97_RS10855 0.40 +0.6 2,249,432 - ABID97_RS10855 0.40 +0.7
Or see this region's nucleotide sequence