Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09970

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09960 and ABID97_RS09965 are separated by 14 nucleotidesABID97_RS09965 and ABID97_RS09970 are separated by 20 nucleotidesABID97_RS09970 and ABID97_RS09975 are separated by 13 nucleotides ABID97_RS09960: ABID97_RS09960 - aldehyde dehydrogenase family protein, at 2,069,711 to 2,071,147 _RS09960 ABID97_RS09965: ABID97_RS09965 - dihydrodipicolinate synthase family protein, at 2,071,162 to 2,072,091 _RS09965 ABID97_RS09970: ABID97_RS09970 - altronate dehydratase family protein, at 2,072,112 to 2,073,653 _RS09970 ABID97_RS09975: ABID97_RS09975 - L-rhamnonate dehydratase, at 2,073,667 to 2,074,839 _RS09975 Position (kb) 2072 2073 2074Strain fitness (log2 ratio) -1 0 1 2at 2071.361 kb on + strand, within ABID97_RS09965at 2071.362 kb on - strand, within ABID97_RS09965at 2071.706 kb on + strand, within ABID97_RS09965at 2071.706 kb on + strand, within ABID97_RS09965at 2071.706 kb on + strand, within ABID97_RS09965at 2071.755 kb on - strand, within ABID97_RS09965at 2072.353 kb on + strand, within ABID97_RS09970at 2072.353 kb on + strand, within ABID97_RS09970at 2072.488 kb on + strand, within ABID97_RS09970at 2072.489 kb on - strand, within ABID97_RS09970at 2072.620 kb on + strand, within ABID97_RS09970at 2072.620 kb on + strand, within ABID97_RS09970at 2072.707 kb on + strand, within ABID97_RS09970at 2072.707 kb on + strand, within ABID97_RS09970at 2072.707 kb on + strand, within ABID97_RS09970at 2073.274 kb on + strand, within ABID97_RS09970at 2073.274 kb on + strand, within ABID97_RS09970at 2073.275 kb on - strand, within ABID97_RS09970at 2073.275 kb on - strand, within ABID97_RS09970at 2073.275 kb on - strand, within ABID97_RS09970at 2073.785 kb on + strand, within ABID97_RS09975at 2073.785 kb on + strand, within ABID97_RS09975at 2073.786 kb on - strand, within ABID97_RS09975at 2073.788 kb on + strand, within ABID97_RS09975at 2073.788 kb on + strand, within ABID97_RS09975at 2073.789 kb on - strand, within ABID97_RS09975at 2073.830 kb on + strand, within ABID97_RS09975at 2073.873 kb on - strand, within ABID97_RS09975at 2073.914 kb on + strand, within ABID97_RS09975at 2073.915 kb on - strand, within ABID97_RS09975at 2074.193 kb on + strand, within ABID97_RS09975at 2074.193 kb on + strand, within ABID97_RS09975at 2074.194 kb on - strand, within ABID97_RS09975at 2074.194 kb on - strand, within ABID97_RS09975at 2074.194 kb on - strand, within ABID97_RS09975at 2074.379 kb on + strand, within ABID97_RS09975at 2074.391 kb on + strand, within ABID97_RS09975at 2074.391 kb on + strand, within ABID97_RS09975at 2074.394 kb on + strand, within ABID97_RS09975at 2074.395 kb on - strand, within ABID97_RS09975at 2074.395 kb on - strand, within ABID97_RS09975at 2074.545 kb on - strand, within ABID97_RS09975at 2074.562 kb on + strand, within ABID97_RS09975at 2074.563 kb on - strand, within ABID97_RS09975

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,071,361 + ABID97_RS09965 0.21 +0.8
2,071,362 - ABID97_RS09965 0.22 -0.6
2,071,706 + ABID97_RS09965 0.58 -0.1
2,071,706 + ABID97_RS09965 0.58 -0.1
2,071,706 + ABID97_RS09965 0.58 -0.1
2,071,755 - ABID97_RS09965 0.64 -0.7
2,072,353 + ABID97_RS09970 0.16 -0.2
2,072,353 + ABID97_RS09970 0.16 +0.6
2,072,488 + ABID97_RS09970 0.24 +0.4
2,072,489 - ABID97_RS09970 0.24 +0.4
2,072,620 + ABID97_RS09970 0.33 +0.7
2,072,620 + ABID97_RS09970 0.33 -1.3
2,072,707 + ABID97_RS09970 0.39 +0.6
2,072,707 + ABID97_RS09970 0.39 -0.2
2,072,707 + ABID97_RS09970 0.39 -0.6
2,073,274 + ABID97_RS09970 0.75 -0.4
2,073,274 + ABID97_RS09970 0.75 +1.3
2,073,275 - ABID97_RS09970 0.75 -0.5
2,073,275 - ABID97_RS09970 0.75 -0.6
2,073,275 - ABID97_RS09970 0.75 -0.2
2,073,785 + ABID97_RS09975 0.10 +0.4
2,073,785 + ABID97_RS09975 0.10 +0.3
2,073,786 - ABID97_RS09975 0.10 -0.9
2,073,788 + ABID97_RS09975 0.10 +0.5
2,073,788 + ABID97_RS09975 0.10 -0.8
2,073,789 - ABID97_RS09975 0.10 -1.4
2,073,830 + ABID97_RS09975 0.14 -1.0
2,073,873 - ABID97_RS09975 0.18 +0.2
2,073,914 + ABID97_RS09975 0.21 +0.2
2,073,915 - ABID97_RS09975 0.21 +0.5
2,074,193 + ABID97_RS09975 0.45 +2.0
2,074,193 + ABID97_RS09975 0.45 +0.1
2,074,194 - ABID97_RS09975 0.45 +0.4
2,074,194 - ABID97_RS09975 0.45 -0.6
2,074,194 - ABID97_RS09975 0.45 -0.5
2,074,379 + ABID97_RS09975 0.61 -0.3
2,074,391 + ABID97_RS09975 0.62 +0.1
2,074,391 + ABID97_RS09975 0.62 +0.1
2,074,394 + ABID97_RS09975 0.62 -0.6
2,074,395 - ABID97_RS09975 0.62 +0.3
2,074,395 - ABID97_RS09975 0.62 +0.1
2,074,545 - ABID97_RS09975 0.75 -0.4
2,074,562 + ABID97_RS09975 0.76 +0.3
2,074,563 - ABID97_RS09975 0.76 +0.2

Or see this region's nucleotide sequence