Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09790

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS09780 and ABID97_RS09785 overlap by 4 nucleotidesABID97_RS09785 and ABID97_RS09790 are separated by 87 nucleotidesABID97_RS09790 and ABID97_RS09795 overlap by 4 nucleotidesABID97_RS09795 and ABID97_RS09800 are separated by 160 nucleotides ABID97_RS09780: ABID97_RS09780 - hypothetical protein, at 2,041,210 to 2,042,460 _RS09780 ABID97_RS09785: ABID97_RS09785 - SPRY domain-containing protein, at 2,042,457 to 2,043,014 _RS09785 ABID97_RS09790: ABID97_RS09790 - hypothetical protein, at 2,043,102 to 2,043,404 _RS09790 ABID97_RS09795: ABID97_RS09795 - lysozyme, at 2,043,401 to 2,043,937 _RS09795 ABID97_RS09800: ABID97_RS09800 - hypothetical protein, at 2,044,098 to 2,044,475 _RS09800 Position (kb) 2043 2044Strain fitness (log2 ratio) -1 0 1at 2042.392 kb on + strandat 2042.494 kb on + strandat 2042.706 kb on - strand, within ABID97_RS09785at 2042.713 kb on - strand, within ABID97_RS09785at 2042.766 kb on + strand, within ABID97_RS09785at 2042.767 kb on - strand, within ABID97_RS09785at 2042.914 kb on - strand, within ABID97_RS09785at 2042.914 kb on - strand, within ABID97_RS09785at 2043.012 kb on + strandat 2043.013 kb on - strandat 2043.357 kb on + strand, within ABID97_RS09790at 2043.611 kb on + strand, within ABID97_RS09795at 2043.740 kb on + strand, within ABID97_RS09795at 2043.740 kb on + strand, within ABID97_RS09795at 2044.097 kb on + strandat 2044.097 kb on + strandat 2044.098 kb on - strandat 2044.195 kb on - strand, within ABID97_RS09800

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
2,042,392 + +0.1
2,042,494 + -0.1
2,042,706 - ABID97_RS09785 0.45 +0.6
2,042,713 - ABID97_RS09785 0.46 -1.0
2,042,766 + ABID97_RS09785 0.55 -0.5
2,042,767 - ABID97_RS09785 0.56 +0.4
2,042,914 - ABID97_RS09785 0.82 -0.6
2,042,914 - ABID97_RS09785 0.82 -0.8
2,043,012 + -1.5
2,043,013 - -0.1
2,043,357 + ABID97_RS09790 0.84 -0.4
2,043,611 + ABID97_RS09795 0.39 -0.0
2,043,740 + ABID97_RS09795 0.63 -0.0
2,043,740 + ABID97_RS09795 0.63 -0.5
2,044,097 + -0.2
2,044,097 + -0.3
2,044,098 - -0.0
2,044,195 - ABID97_RS09800 0.26 -0.7

Or see this region's nucleotide sequence