Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09780 and ABID97_RS09785 overlap by 4 nucleotides ABID97_RS09785 and ABID97_RS09790 are separated by 87 nucleotides ABID97_RS09790 and ABID97_RS09795 overlap by 4 nucleotides ABID97_RS09795 and ABID97_RS09800 are separated by 160 nucleotides
ABID97_RS09780: ABID97_RS09780 - hypothetical protein, at 2,041,210 to 2,042,460
_RS09780
ABID97_RS09785: ABID97_RS09785 - SPRY domain-containing protein, at 2,042,457 to 2,043,014
_RS09785
ABID97_RS09790: ABID97_RS09790 - hypothetical protein, at 2,043,102 to 2,043,404
_RS09790
ABID97_RS09795: ABID97_RS09795 - lysozyme, at 2,043,401 to 2,043,937
_RS09795
ABID97_RS09800: ABID97_RS09800 - hypothetical protein, at 2,044,098 to 2,044,475
_RS09800
Position (kb)
2043
2044 Strain fitness (log2 ratio)
-1
0
1 at 2042.392 kb on + strand at 2042.494 kb on + strand at 2042.706 kb on - strand, within ABID97_RS09785 at 2042.713 kb on - strand, within ABID97_RS09785 at 2042.766 kb on + strand, within ABID97_RS09785 at 2042.767 kb on - strand, within ABID97_RS09785 at 2042.914 kb on - strand, within ABID97_RS09785 at 2042.914 kb on - strand, within ABID97_RS09785 at 2043.012 kb on + strand at 2043.013 kb on - strand at 2043.357 kb on + strand, within ABID97_RS09790 at 2043.611 kb on + strand, within ABID97_RS09795 at 2043.740 kb on + strand, within ABID97_RS09795 at 2043.740 kb on + strand, within ABID97_RS09795 at 2044.097 kb on + strand at 2044.097 kb on + strand at 2044.098 kb on - strand at 2044.195 kb on - strand, within ABID97_RS09800
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 2,042,392 + +0.1 2,042,494 + -0.1 2,042,706 - ABID97_RS09785 0.45 +0.6 2,042,713 - ABID97_RS09785 0.46 -1.0 2,042,766 + ABID97_RS09785 0.55 -0.5 2,042,767 - ABID97_RS09785 0.56 +0.4 2,042,914 - ABID97_RS09785 0.82 -0.6 2,042,914 - ABID97_RS09785 0.82 -0.8 2,043,012 + -1.5 2,043,013 - -0.1 2,043,357 + ABID97_RS09790 0.84 -0.4 2,043,611 + ABID97_RS09795 0.39 -0.0 2,043,740 + ABID97_RS09795 0.63 -0.0 2,043,740 + ABID97_RS09795 0.63 -0.5 2,044,097 + -0.2 2,044,097 + -0.3 2,044,098 - -0.0 2,044,195 - ABID97_RS09800 0.26 -0.7
Or see this region's nucleotide sequence