Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09155 and ABID97_RS09160 overlap by 4 nucleotides ABID97_RS09160 and ABID97_RS09165 are separated by 18 nucleotides ABID97_RS09165 and ABID97_RS09170 are separated by 10 nucleotides
ABID97_RS09155: ABID97_RS09155 - DUF2339 domain-containing protein, at 1,921,636 to 1,925,391
_RS09155
ABID97_RS09160: ABID97_RS09160 - DUF3999 domain-containing protein, at 1,925,388 to 1,926,929
_RS09160
ABID97_RS09165: ABID97_RS09165 - BPSS1780 family membrane protein, at 1,926,948 to 1,927,778
_RS09165
ABID97_RS09170: ABID97_RS09170 - homoserine kinase, at 1,927,789 to 1,928,835
_RS09170
Position (kb)
1925
1926
1927 Strain fitness (log2 ratio)
-1
0
1 at 1924.477 kb on + strand, within ABID97_RS09155 at 1924.477 kb on + strand, within ABID97_RS09155 at 1924.478 kb on - strand, within ABID97_RS09155 at 1924.478 kb on - strand, within ABID97_RS09155 at 1924.781 kb on - strand, within ABID97_RS09155 at 1924.814 kb on - strand, within ABID97_RS09155 at 1925.092 kb on + strand at 1925.532 kb on + strand at 1925.631 kb on + strand, within ABID97_RS09160 at 1926.186 kb on + strand, within ABID97_RS09160 at 1926.336 kb on + strand, within ABID97_RS09160 at 1926.337 kb on - strand, within ABID97_RS09160 at 1926.337 kb on - strand, within ABID97_RS09160 at 1926.337 kb on - strand, within ABID97_RS09160 at 1926.337 kb on - strand, within ABID97_RS09160 at 1926.418 kb on - strand, within ABID97_RS09160 at 1926.418 kb on - strand, within ABID97_RS09160 at 1926.481 kb on - strand, within ABID97_RS09160 at 1926.558 kb on - strand, within ABID97_RS09160 at 1927.166 kb on - strand, within ABID97_RS09165 at 1927.363 kb on + strand, within ABID97_RS09165 at 1927.364 kb on - strand, within ABID97_RS09165 at 1927.423 kb on + strand, within ABID97_RS09165 at 1927.423 kb on + strand, within ABID97_RS09165 at 1927.423 kb on + strand, within ABID97_RS09165 at 1927.424 kb on - strand, within ABID97_RS09165 at 1927.424 kb on - strand, within ABID97_RS09165 at 1927.424 kb on - strand, within ABID97_RS09165 at 1927.561 kb on + strand, within ABID97_RS09165 at 1927.561 kb on + strand, within ABID97_RS09165 at 1927.562 kb on - strand, within ABID97_RS09165 at 1927.562 kb on - strand, within ABID97_RS09165
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,924,477 + ABID97_RS09155 0.76 -0.8 1,924,477 + ABID97_RS09155 0.76 +0.2 1,924,478 - ABID97_RS09155 0.76 +0.0 1,924,478 - ABID97_RS09155 0.76 +0.1 1,924,781 - ABID97_RS09155 0.84 +0.6 1,924,814 - ABID97_RS09155 0.85 -0.0 1,925,092 + +0.2 1,925,532 + -0.4 1,925,631 + ABID97_RS09160 0.16 +0.9 1,926,186 + ABID97_RS09160 0.52 -0.5 1,926,336 + ABID97_RS09160 0.61 -0.3 1,926,337 - ABID97_RS09160 0.62 +1.1 1,926,337 - ABID97_RS09160 0.62 -0.8 1,926,337 - ABID97_RS09160 0.62 -0.2 1,926,337 - ABID97_RS09160 0.62 -0.6 1,926,418 - ABID97_RS09160 0.67 +0.4 1,926,418 - ABID97_RS09160 0.67 +0.3 1,926,481 - ABID97_RS09160 0.71 -0.2 1,926,558 - ABID97_RS09160 0.76 +0.1 1,927,166 - ABID97_RS09165 0.26 +0.2 1,927,363 + ABID97_RS09165 0.50 -0.3 1,927,364 - ABID97_RS09165 0.50 +0.2 1,927,423 + ABID97_RS09165 0.57 +0.1 1,927,423 + ABID97_RS09165 0.57 -0.0 1,927,423 + ABID97_RS09165 0.57 +1.4 1,927,424 - ABID97_RS09165 0.57 -0.2 1,927,424 - ABID97_RS09165 0.57 +0.4 1,927,424 - ABID97_RS09165 0.57 +0.3 1,927,561 + ABID97_RS09165 0.74 -0.1 1,927,561 + ABID97_RS09165 0.74 -0.0 1,927,562 - ABID97_RS09165 0.74 +0.4 1,927,562 - ABID97_RS09165 0.74 +0.2
Or see this region's nucleotide sequence