Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09160

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09155 and ABID97_RS09160 overlap by 4 nucleotidesABID97_RS09160 and ABID97_RS09165 are separated by 18 nucleotidesABID97_RS09165 and ABID97_RS09170 are separated by 10 nucleotides ABID97_RS09155: ABID97_RS09155 - DUF2339 domain-containing protein, at 1,921,636 to 1,925,391 _RS09155 ABID97_RS09160: ABID97_RS09160 - DUF3999 domain-containing protein, at 1,925,388 to 1,926,929 _RS09160 ABID97_RS09165: ABID97_RS09165 - BPSS1780 family membrane protein, at 1,926,948 to 1,927,778 _RS09165 ABID97_RS09170: ABID97_RS09170 - homoserine kinase, at 1,927,789 to 1,928,835 _RS09170 Position (kb) 1925 1926 1927Strain fitness (log2 ratio) -1 0 1at 1924.477 kb on + strand, within ABID97_RS09155at 1924.477 kb on + strand, within ABID97_RS09155at 1924.478 kb on - strand, within ABID97_RS09155at 1924.478 kb on - strand, within ABID97_RS09155at 1924.781 kb on - strand, within ABID97_RS09155at 1924.814 kb on - strand, within ABID97_RS09155at 1925.092 kb on + strandat 1925.532 kb on + strandat 1925.631 kb on + strand, within ABID97_RS09160at 1926.186 kb on + strand, within ABID97_RS09160at 1926.336 kb on + strand, within ABID97_RS09160at 1926.337 kb on - strand, within ABID97_RS09160at 1926.337 kb on - strand, within ABID97_RS09160at 1926.337 kb on - strand, within ABID97_RS09160at 1926.337 kb on - strand, within ABID97_RS09160at 1926.418 kb on - strand, within ABID97_RS09160at 1926.418 kb on - strand, within ABID97_RS09160at 1926.481 kb on - strand, within ABID97_RS09160at 1926.558 kb on - strand, within ABID97_RS09160at 1927.166 kb on - strand, within ABID97_RS09165at 1927.363 kb on + strand, within ABID97_RS09165at 1927.364 kb on - strand, within ABID97_RS09165at 1927.423 kb on + strand, within ABID97_RS09165at 1927.423 kb on + strand, within ABID97_RS09165at 1927.423 kb on + strand, within ABID97_RS09165at 1927.424 kb on - strand, within ABID97_RS09165at 1927.424 kb on - strand, within ABID97_RS09165at 1927.424 kb on - strand, within ABID97_RS09165at 1927.561 kb on + strand, within ABID97_RS09165at 1927.561 kb on + strand, within ABID97_RS09165at 1927.562 kb on - strand, within ABID97_RS09165at 1927.562 kb on - strand, within ABID97_RS09165

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,924,477 + ABID97_RS09155 0.76 -0.8
1,924,477 + ABID97_RS09155 0.76 +0.2
1,924,478 - ABID97_RS09155 0.76 +0.0
1,924,478 - ABID97_RS09155 0.76 +0.1
1,924,781 - ABID97_RS09155 0.84 +0.6
1,924,814 - ABID97_RS09155 0.85 -0.0
1,925,092 + +0.2
1,925,532 + -0.4
1,925,631 + ABID97_RS09160 0.16 +0.9
1,926,186 + ABID97_RS09160 0.52 -0.5
1,926,336 + ABID97_RS09160 0.61 -0.3
1,926,337 - ABID97_RS09160 0.62 +1.1
1,926,337 - ABID97_RS09160 0.62 -0.8
1,926,337 - ABID97_RS09160 0.62 -0.2
1,926,337 - ABID97_RS09160 0.62 -0.6
1,926,418 - ABID97_RS09160 0.67 +0.4
1,926,418 - ABID97_RS09160 0.67 +0.3
1,926,481 - ABID97_RS09160 0.71 -0.2
1,926,558 - ABID97_RS09160 0.76 +0.1
1,927,166 - ABID97_RS09165 0.26 +0.2
1,927,363 + ABID97_RS09165 0.50 -0.3
1,927,364 - ABID97_RS09165 0.50 +0.2
1,927,423 + ABID97_RS09165 0.57 +0.1
1,927,423 + ABID97_RS09165 0.57 -0.0
1,927,423 + ABID97_RS09165 0.57 +1.4
1,927,424 - ABID97_RS09165 0.57 -0.2
1,927,424 - ABID97_RS09165 0.57 +0.4
1,927,424 - ABID97_RS09165 0.57 +0.3
1,927,561 + ABID97_RS09165 0.74 -0.1
1,927,561 + ABID97_RS09165 0.74 -0.0
1,927,562 - ABID97_RS09165 0.74 +0.4
1,927,562 - ABID97_RS09165 0.74 +0.2

Or see this region's nucleotide sequence